"""
Structured information on the species.
"""
# this file was auto-generated
from openminds.properties import Property
from openminds.v4.controlled_terms import Species as OMSpecies
from fairgraph import KGObject
from openminds import IRI
[docs]
class Species(KGObject, OMSpecies):
"""
Structured information on the species.
"""
type_ = "https://openminds.om-i.org/types/Species"
default_space = "controlled"
# forward properties are defined in the parent class (in openMINDS-Python)
reverse_properties = [
Property(
"common_coordinate_space",
["openminds.v4.sands.BrainAtlas", "openminds.v4.sands.CommonCoordinateSpace"],
"usedSpecies",
reverse="used_species",
multiple=True,
description="reverse of 'used_species'",
),
Property(
"describes",
[
"openminds.v4.computation.ValidationTestVersion",
"openminds.v4.computation.WorkflowRecipeVersion",
"openminds.v4.core.MetaDataModelVersion",
"openminds.v4.core.ModelVersion",
"openminds.v4.core.SoftwareVersion",
"openminds.v4.core.WebServiceVersion",
"openminds.v4.publications.Book",
"openminds.v4.publications.Chapter",
"openminds.v4.publications.LearningResource",
"openminds.v4.publications.LivePaperVersion",
"openminds.v4.publications.ScholarlyArticle",
"openminds.v4.sands.BrainAtlasVersion",
"openminds.v4.sands.CommonCoordinateSpaceVersion",
],
"keyword",
reverse="keywords",
multiple=True,
description="reverse of 'keywords'",
),
Property(
"is_species_of",
[
"openminds.v4.core.Strain",
"openminds.v4.core.Subject",
"openminds.v4.core.SubjectGroup",
"openminds.v4.core.TissueSample",
"openminds.v4.core.TissueSampleCollection",
],
"species",
reverse="species",
multiple=True,
description="reverse of 'species'",
),
Property(
"is_used_to_group",
"openminds.v4.core.FileBundle",
"groupedBy",
reverse="grouped_by",
multiple=True,
description="reverse of 'grouped_by'",
),
Property(
"studied_in",
[
"openminds.v4.computation.DataAnalysis",
"openminds.v4.computation.DataCopy",
"openminds.v4.computation.GenericComputation",
"openminds.v4.computation.ModelValidation",
"openminds.v4.computation.Optimization",
"openminds.v4.computation.Simulation",
"openminds.v4.computation.ValidationTest",
"openminds.v4.computation.Visualization",
"openminds.v4.core.DatasetVersion",
"openminds.v4.core.Model",
"openminds.v4.core.ProtocolExecution",
"openminds.v4.ephys.CellPatching",
"openminds.v4.ephys.ElectrodePlacement",
"openminds.v4.ephys.RecordingActivity",
"openminds.v4.specimen_prep.CranialWindowPreparation",
"openminds.v4.specimen_prep.TissueCulturePreparation",
"openminds.v4.specimen_prep.TissueSampleSlicing",
"openminds.v4.stimulation.StimulationActivity",
],
"studyTarget",
reverse="study_targets",
multiple=True,
description="reverse of 'study_targets'",
),
]
existence_query_properties = ("name",)
def __init__(
self,
name=None,
common_coordinate_space=None,
definition=None,
describes=None,
description=None,
interlex_identifier=None,
is_species_of=None,
is_used_to_group=None,
knowledge_space_link=None,
preferred_ontology_identifier=None,
studied_in=None,
synonyms=None,
id=None,
data=None,
space=None,
release_status=None,
):
return KGObject.__init__(
self,
id=id,
space=space,
release_status=release_status,
data=data,
name=name,
common_coordinate_space=common_coordinate_space,
definition=definition,
describes=describes,
description=description,
interlex_identifier=interlex_identifier,
is_species_of=is_species_of,
is_used_to_group=is_used_to_group,
knowledge_space_link=knowledge_space_link,
preferred_ontology_identifier=preferred_ontology_identifier,
studied_in=studied_in,
synonyms=synonyms,
)
