commons

class fairgraph.commons.Address(locality, country)[source]

Bases: fairgraph.base.StructuredMetadata

class fairgraph.commons.Group(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The subject group

class fairgraph.commons.CultureType(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The type of cell culture used

class fairgraph.commons.Species(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The species of an experimental subject, expressed with the binomial nomenclature.

class fairgraph.commons.Shape(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

Shape of a region of interest (ROI).

class fairgraph.commons.MorphologyType(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The morphology of the cell used for recording.

class fairgraph.commons.SomaType(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The type of soma of a reconstructed cell.

class fairgraph.commons.ObjectiveType(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The type of objective used for microscopy.

class fairgraph.commons.Strain(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

An inbred sub-population within a species.

class fairgraph.commons.Genotype(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

Transgenic modification of the strain.

class fairgraph.commons.Sex(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The sex of an animal or person from whom/which data were obtained.

class fairgraph.commons.Handedness(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The handedness of an animal or person from whom/which data were obtained.

class fairgraph.commons.ChannelType(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

The recording method used.

class fairgraph.commons.BrainRegion(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

A sub-structure or region with the brain.

class fairgraph.commons.CellType(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

A type of neuron or glial cell.

class fairgraph.commons.AbstractionLevel(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

Level of abstraction for a neuroscience model, e.g.rate neurons, spiking neurons

class fairgraph.commons.ModelScope(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

docstring

class fairgraph.commons.License(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

class fairgraph.commons.StimulusType(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

class fairgraph.commons.Origin(label, iri=None, strict=False)[source]

Bases: fairgraph.base.OntologyTerm

class fairgraph.commons.QuantitativeValue(value, unit_text, unit_code=None)[source]

Bases: fairgraph.base.StructuredMetadata

docstring

class fairgraph.commons.QuantitativeValueRange(min, max, unit_text, unit_code=None)[source]

Bases: fairgraph.base.StructuredMetadata

docstring

class fairgraph.commons.Age(value, period)[source]

Bases: fairgraph.base.StructuredMetadata

Parameters:
  • value (str) –
  • period (str) –