openminds.chemicals

Structured metadata about chemical substances and mixtures used in neuroscience.

class ChemicalSubstance(lookup_label=None, additional_remarks=None, composes=None, labels=None, molecular_entity=None, product_source=None, purity=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, ChemicalSubstance

Structured information about a chemical substance.

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• lookup_label (str) – no description available

• molecular_entity (MolecularEntity) – no description available

• product_source (ProductSource) – no description available

• purity (QuantitativeValue, QuantitativeValueRange) – no description available

• composes (Electrode, ElectrodeArray, Pipette) – reverse of insulator_material, material

• labels (PipetteUsage) – reverse of ‘labeling_compound’

class ChemicalMixture(name=None, additional_remarks=None, composes=None, has_parts=None, product_source=None, type=None, used_in=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, ChemicalMixture

Structured information about a mixture of chemical substances.

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• has_parts (AmountOfChemical) – no description available

• name (str) – Word or phrase that constitutes the distinctive designation of the chemical mixture.

• product_source (ProductSource) – no description available

• type (ChemicalMixtureType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.

• composes (Electrode, ElectrodeArray, Pipette) – reverse of insulator_material, material

• used_in (CellPatching, PipetteUsage, TissueCulturePreparation, TissueSampleSlicing) – reverse of culture_medium, pipette_solution, tissue_bath_solution

class AmountOfChemical(amount=None, chemical_product=None, id=None, data=None, space=None, release_status=None)

Bases: KGEmbedded, AmountOfChemical

Structured information about the amount of a given chemical that was used.

Parameters:

• amount (QuantitativeValue) – no description available

• chemical_product (ChemicalMixture, ChemicalSubstance, MolecularEntity) – no description available

class ProductSource(digital_identifier=None, identifier=None, is_source_of=None, product_name=None, provider=None, purity=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, ProductSource

Structured information about the source of a chemical substance or mixture.

Parameters:

• digital_identifier (RRID) – Digital handle to identify objects or legal persons.

• identifier (str) – Term or code used to identify the product source.

• product_name (str) – no description available

• provider (Consortium, Organization, Person) – no description available

• purity (QuantitativeValue, QuantitativeValueRange) – no description available

• is_source_of (ChemicalMixture, ChemicalSubstance) – reverse of ‘product_source’