openminds.core

Metadata about the general origin, location and content of research products.

Actors

class Person(activities=None, affiliations=None, alternate_names=None, associated_accounts=None, comments=None, contact_information=None, coordinated_projects=None, developed=None, digital_identifiers=None, family_name=None, funded=None, given_name=None, is_custodian_of=None, is_owner_of=None, is_provider_of=None, manufactured=None, published=None, started=None, id=None, data=None, space=None, release_status=None)

Structured information on a person.

Parameters:

• affiliations (Affiliation) – Declaration of a person being closely associated to an organization.

• alternate_names (str) – no description available

• associated_accounts (AccountInformation) – no description available

• contact_information (ContactInformation) – Any available way used to contact a person or business (e.g., address, phone number, email address, etc.).

• digital_identifiers (ORCID) – Digital handle to identify objects or legal persons.

• family_name (str) – Name borne in common by members of a family.

• given_name (str) – Name given to a person, including all potential middle names, but excluding the family name.

• activities (ProtocolExecution, CellPatching, ElectrodePlacement, RecordingActivity, CranialWindowPreparation, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of ‘performed_by’

• comments (Comment) – reverse of ‘commenter’

• coordinated_projects (Project) – reverse of ‘coordinators’

• developed (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, WebService, WebServiceVersion) – reverse of ‘developers’

• funded (Funding) – reverse of ‘funder’

• is_custodian_of (Dataset, DatasetVersion, LivePaper, LivePaperVersion, BrainAtlas, BrainAtlasVersion, CommonCoordinateSpace, CommonCoordinateSpaceVersion) – reverse of ‘custodians’

• is_owner_of (Electrode, ElectrodeArray, Pipette, SlicingDevice) – reverse of ‘owners’

• is_provider_of (ProductSource) – reverse of ‘provider’

• manufactured (Setup) – reverse of ‘manufacturers’

• published (Book, Chapter, LearningResource, ScholarlyArticle) – reverse of ‘publisher’

• started (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization, WorkflowExecution) – reverse of ‘started_by’

class ContactInformation(email=None, is_contact_information_of=None, id=None, data=None, space=None, release_status=None)

Structured information about how to contact a given person or consortium.

Parameters:

• email (str) – Address to which or from which an electronic mail can be sent.

• is_contact_information_of (Consortium, Person) – reverse of ‘contact_information’

class AccountInformation(belongs_to=None, service=None, user_name=None, id=None, data=None, space=None, release_status=None)

Structured information about a user account for a web service.

Parameters:

• service (WebService) – no description available

• user_name (str) – no description available

• belongs_to (Person) – reverse of ‘associated_accounts’

class Organization(name=None, alias=None, affiliations=None, coordinated_projects=None, developed=None, digital_identifiers=None, full_name=None, funded=None, has_children=None, has_members=None, has_parents=None, homepage=None, hosts=None, is_custodian_of=None, is_owner_of=None, is_provider_of=None, manufactured=None, published=None, short_name=None, id=None, data=None, space=None, release_status=None)

An entity comprised of one or more natural persons with a particular purpose. [adapted from Wikipedia](https://en.wikipedia.org/wiki/Organization)

Parameters:

• affiliations (Affiliation) – Declaration of a person being closely associated to an organization.

• digital_identifiers (GRIDID, RORID, RRID) – Digital handle to identify objects or legal persons.

• full_name (str) – Whole, non-abbreviated name of the organization.

• has_parents (Organization) – Reference to a parent object or legal person.

• homepage (IRI) – Main website of the organization.

• short_name (str) – Shortened or fully abbreviated name of the organization.

• coordinated_projects (Project) – reverse of ‘coordinators’

• developed (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, WebService, WebServiceVersion) – reverse of ‘developers’

• funded (Funding) – reverse of ‘funder’

• has_children (Organization) – reverse of ‘has_parents’

• has_members (Affiliation) – reverse of ‘member_of’

• hosts (FileRepository, LivePaperResourceItem) – reverse of ‘hosted_by’

• is_custodian_of (Dataset, DatasetVersion, LivePaper, LivePaperVersion, BrainAtlas, BrainAtlasVersion, CommonCoordinateSpace, CommonCoordinateSpaceVersion) – reverse of ‘custodians’

• is_owner_of (Electrode, ElectrodeArray, Pipette, SlicingDevice) – reverse of ‘owners’

• is_provider_of (ProductSource) – reverse of ‘provider’

• manufactured (Setup) – reverse of ‘manufacturers’

• published (Book, Chapter, LearningResource, ScholarlyArticle) – reverse of ‘publisher’

class Consortium(name=None, alias=None, contact_information=None, coordinated_projects=None, developed=None, full_name=None, funded=None, has_members=None, homepage=None, is_custodian_of=None, is_owner_of=None, is_provider_of=None, manufactured=None, published=None, short_name=None, id=None, data=None, space=None, release_status=None)

Structured information about an association of two or more persons or organizations, with the objective of participating in a common activity.

Parameters:

• contact_information (ContactInformation) – Any available way used to contact a person or business (e.g., address, phone number, email address, etc.).

• full_name (str) – Whole, non-abbreviated name of the consortium.

• homepage (IRI) – Main website of the consortium.

• short_name (str) – Shortened or fully abbreviated name of the consortium.

• coordinated_projects (Project) – reverse of ‘coordinators’

• developed (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, WebService, WebServiceVersion) – reverse of ‘developers’

• funded (Funding) – reverse of ‘funder’

• has_members (Affiliation) – reverse of ‘member_of’

• is_custodian_of (Dataset, DatasetVersion, LivePaper, LivePaperVersion, BrainAtlas, BrainAtlasVersion, CommonCoordinateSpace, CommonCoordinateSpaceVersion) – reverse of ‘custodians’

• is_owner_of (Electrode, ElectrodeArray, Pipette, SlicingDevice) – reverse of ‘owners’

• is_provider_of (ProductSource) – reverse of ‘provider’

• manufactured (Setup) – reverse of ‘manufacturers’

• published (Book, Chapter, LearningResource, ScholarlyArticle) – reverse of ‘publisher’

class Affiliation(end_date=None, member_of=None, start_date=None, id=None, data=None, space=None, release_status=None)

Structured information about a relationship between two entities, such as a person and their employer.

Parameters:

• end_date (date) – Date in the Gregorian calendar at which something terminates in time.

• member_of (Consortium, Organization) – no description available

• start_date (date) – Date in the Gregorian calendar at which something begins in time

class Contribution(contributor=None, types=None, id=None, data=None, space=None, release_status=None)

Structured information on the contribution made to a research product.

Parameters:

• contributor (Consortium, Organization, Person) – Legal person that gave or supplied something as a part or share.

• types (ContributionType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.

Data

class ContentType(name=None, data_types=None, description=None, display_label=None, file_extensions=None, is_defined_by=None, is_format_of=None, is_output_format_of=None, is_specification_format_of=None, related_media_type=None, specification=None, synonyms=None, id=None, data=None, space=None, release_status=None)

Structured information on the content type of a file instance, bundle or repository.

Parameters:

• data_types (DataType) – no description available

• description (str) – Longer statement or account giving the characteristics of the content type.

• display_label (str) – no description available

• file_extensions (str) – String of characters attached as suffix to the names of files of a particular format.

• name (str) – Word or phrase that constitutes the distinctive designation of the content type.

• related_media_type (IRI) – Reference to an official two-part identifier for file formats and format contents.

• specification (IRI) – Detailed and precise presentation of, or proposal for something.

• synonyms (str) – Words or expressions used in the same language that have the same or nearly the same meaning in some or all senses.

• is_defined_by (ContentTypePattern) – reverse of ‘content_type’

• is_format_of (LocalFile, ValidationTestVersion, WorkflowRecipeVersion, Configuration, File, FileArchive, FileBundle, FileRepository, ModelVersion, WebResource) – reverse of ‘format’

• is_output_format_of (SoftwareVersion, WebServiceVersion) – reverse of ‘output_formats’

• is_specification_format_of (MetaDataModelVersion) – reverse of ‘specification_formats’

class ContentTypePattern(lookup_label=None, content_type=None, identifies_content_of=None, regex=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• content_type (ContentType) – no description available

• lookup_label (str) – no description available

• regex (str) – no description available

• identifies_content_of (FileRepository) – reverse of ‘content_type_patterns’

class Copyright(holders=None, years=None, id=None, data=None, space=None, release_status=None)

Structured information on the copyright.

Parameters:

• holders (Consortium, Organization, Person) – Legal person in possession of something.

• years (str) – Cycle in the Gregorian calendar specified by a number and comprised of 365 or 366 days divided into 12 months beginning with January and ending with December.

class File(name=None, content_description=None, data_types=None, describes=None, file_repository=None, format=None, fully_documents=None, has_copies=None, hash=None, hashes=None, iri=None, is_also_part_of=None, is_configuration_of=None, is_default_image_for=None, is_input_to=None, is_location_of=None, is_output_of=None, is_part_of=None, is_preview_of=None, is_reference_for=None, is_source_data_of=None, is_used_to_group=None, special_usage_role=None, specifies=None, storage_size=None, id=None, data=None, space=None, release_status=None)

Structured information on a file instance that is accessible via a URL.

Parameters:

• content_description (str) – no description available

• data_types (DataType) – no description available

• file_repository (FileRepository) – no description available

• format (ContentType) – Method of digitally organizing and structuring data or information.

• hashes (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.

• iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.

• is_part_of (FileBundle) – Reference to the ensemble of multiple things or beings.

• name (str) – Word or phrase that constitutes the distinctive designation of the file.

• special_usage_role (FileUsageRole) – Particular function of something when it is used.

• storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.

• describes (BehavioralProtocol, Protocol, ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, SlicingDeviceUsage) – reverse of described_in, metadata_locations

• fully_documents (MetaDataModelVersion, SoftwareVersion, WebServiceVersion, LivePaperVersion, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘full_documentation’

• has_copies (LocalFile) – reverse of ‘copy_of’

• is_also_part_of (WorkflowRecipeVersion) – reverse of ‘has_parts’

• is_configuration_of (WorkflowExecution) – reverse of ‘configuration’

• is_default_image_for (CustomCoordinateSpace) – reverse of ‘default_images’

• is_input_to (DatasetVersion) – reverse of ‘input_data’

• is_location_of (Recording, ParcellationTerminologyVersion) – reverse of ‘data_location’

• is_output_of (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization, ModelVersion, ProtocolExecution, RecordingActivity, StimulationActivity) – reverse of output_data, outputs

• is_preview_of (ServiceLink) – reverse of ‘preview_image’

• is_reference_for (ValidationTestVersion) – reverse of ‘reference_data’

• is_source_data_of (FileArchive) – reverse of ‘source_data’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

• specifies (AtlasAnnotation, CustomAnnotation, EphysStimulus) – reverse of ‘specification’

class FileBundle(name=None, content_description=None, describes=None, format=None, grouped_by=None, grouping_types=None, has_parts=None, hash=None, is_also_part_of=None, is_input_to=None, is_location_of=None, is_output_of=None, is_part_of=None, is_reference_for=None, specifies=None, storage_size=None, id=None, data=None, space=None, release_status=None)

Structured information on a bundle of file instances.

Parameters:

• content_description (str) – no description available

• format (ContentType) – Method of digitally organizing and structuring data or information.

• grouped_by (LocalFile, AnalysisTechnique, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, Disease, DiseaseModel, ElectricalStimulusType, GeneticStrainType, GustatoryStimulusType, Handedness, MRIPulseSequence, MRIWeighting, MolecularEntity, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, TactileStimulusType, Technique, TermSuggestion, TissueSampleType, UBERONParcellation, VisualStimulusType, BehavioralProtocol, File, FileBundle, Subject, SubjectGroup, SubjectGroupState, SubjectState, TissueSample, TissueSampleCollection, TissueSampleCollectionState, TissueSampleState, CommonCoordinateSpace, CommonCoordinateSpaceVersion, CustomAnatomicalEntity, CustomCoordinateSpace, ParcellationEntity, ParcellationEntityVersion) – Reference to the aspect used to group something.

• grouping_types (FileBundleGrouping) – no description available

• hash (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.

• is_part_of (FileBundle, FileRepository) – Reference to the ensemble of multiple things or beings.

• name (str) – Word or phrase that constitutes the distinctive designation of the file bundle.

• storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.

• describes (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, SlicingDeviceUsage) – reverse of ‘metadata_locations’

• has_parts (File, FileBundle) – reverse of ‘is_part_of’

• is_also_part_of (WorkflowRecipeVersion) – reverse of ‘has_parts’

• is_input_to (DatasetVersion) – reverse of ‘input_data’

• is_location_of (ServiceLink, Recording) – reverse of ‘data_location’

• is_output_of (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization, ModelVersion, ProtocolExecution, RecordingActivity, StimulationActivity) – reverse of output_data, outputs

• is_reference_for (ValidationTestVersion) – reverse of ‘reference_data’

• specifies (EphysStimulus) – reverse of ‘specifications’

class FileRepository(name=None, contains_content_of=None, content_type_patterns=None, files=None, format=None, has_parts=None, hash=None, hosted_by=None, iri=None, storage_size=None, structure_pattern=None, type=None, id=None, data=None, space=None, release_status=None)

Structured information on a file repository.

Parameters:

• content_type_patterns (ContentTypePattern) – no description available

• format (ContentType) – Method of digitally organizing and structuring data or information.

• hash (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.

• hosted_by (Organization) – Reference to an organization that provides facilities and services for something.

• iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.

• name (str) – Word or phrase that constitutes the distinctive designation of the file repository.

• storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.

• structure_pattern (FileRepositoryStructure) – no description available

• type (FileRepositoryType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.

• contains_content_of (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, WebServiceVersion, LivePaperVersion, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘repository’

• files (File) – reverse of ‘file_repository’

• has_parts (FileBundle) – reverse of ‘is_part_of’

class FileArchive(format=None, iri=None, is_location_of=None, is_output_of=None, source_data=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• format (ContentType) – Method of digitally organizing and structuring data or information.

• iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.

• source_data (File) – no description available

• is_location_of (ServiceLink) – reverse of ‘data_location’

• is_output_of (DataAnalysis, GenericComputation, Simulation, Visualization) – reverse of ‘outputs’

class FilePathPattern(grouping_types=None, regex=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• grouping_types (FileBundleGrouping) – no description available

• regex (str) – no description available

class FileRepositoryStructure(lookup_label=None, file_path_patterns=None, structures=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• file_path_patterns (FilePathPattern) – no description available

• lookup_label (str) – no description available

• structures (FileRepository) – reverse of ‘structure_pattern’

class Hash(algorithm=None, digest=None, id=None, data=None, space=None, release_status=None)

Structured information on a hash.

Parameters:

• algorithm (str) – Procedure for solving a mathematical problem in a finite number of steps. Can involve repetition of an operation.

• digest (str) – Summation or condensation of a body of information.

class License(name=None, alias=None, full_name=None, is_applied_to=None, legal_code=None, short_name=None, webpages=None, id=None, data=None, space=None, release_status=None)

Structured information on a used license.

Parameters:

• full_name (str) – Whole, non-abbreviated name of the license.

• legal_code (IRI) – Type of legislation that claims to cover the law system (complete or parts) as it existed at the time the code was enacted.

• short_name (str) – Shortened or fully abbreviated name of the license.

• webpages (str) – Hypertext document (block of information) found on the World Wide Web.

• is_applied_to (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, Book, Chapter, LearningResource, LivePaperVersion, ScholarlyArticle, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘license’

class ServiceLink(data_location=None, display_label=None, open_data_in=None, preview_image=None, service=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• data_location (File, FileArchive, FileBundle, ModelVersion, LivePaperResourceItem, ParcellationEntityVersion) – no description available

• display_label (str) – no description available

• open_data_in (IRI) – no description available

• preview_image (File) – no description available

• service (Service) – no description available

class Measurement(additional_remarks=None, measured_quantity=None, measured_with=None, timestamp=None, values=None, id=None, data=None, space=None, release_status=None)

Structured information about a measurement performed during a scientific experiment.

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• measured_quantity (MeasuredQuantity) – no description available

• measured_with (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, SlicingDeviceUsage) – no description available

• timestamp (datetime) – no description available

• values (QuantitativeValue, QuantitativeValueRange) – Entry for a property.

class QuantitativeValue(type_of_uncertainty=None, uncertainties=None, unit=None, value=None, id=None, data=None, space=None, release_status=None)

Structured information on a quantitative value.

Parameters:

• type_of_uncertainty (TypeOfUncertainty) – Distinct technique used to quantify the uncertainty of a measurement.

• uncertainties (Real) – Quantitative value range defining the uncertainty of a measurement.

• unit (UnitOfMeasurement) – Determinate quantity adopted as a standard of measurement.

• value (Real) – Entry for a property.

class QuantitativeValueArray(negative_uncertainties=None, positive_uncertainties=None, type_of_uncertainty=None, unit=None, values=None, id=None, data=None, space=None, release_status=None)

A representation of an array of quantitative values, optionally with uncertainties.

Parameters:

• negative_uncertainties (Real) – no description available

• positive_uncertainties (Real) – no description available

• type_of_uncertainty (TypeOfUncertainty) – Distinct technique used to quantify the uncertainty of a measurement.

• unit (UnitOfMeasurement) – Determinate quantity adopted as a standard of measurement.

• values (Real) – no description available

class QuantitativeValueRange(max_value=None, max_value_unit=None, min_value=None, min_value_unit=None, id=None, data=None, space=None, release_status=None)

A representation of a range of quantitative values.

Parameters:

• max_value (Real) – Greatest quantity attained or allowed.

• max_value_unit (UnitOfMeasurement) – no description available

• min_value (Real) – Smallest quantity attained or allowed.

• min_value_unit (UnitOfMeasurement) – no description available

Miscellaneous

class Comment(about=None, comment=None, commenter=None, timestamp=None, id=None, data=None, space=None, release_status=None)

Structured information about a short text expressing an opinion on, or giving information about some entity.

Parameters:

• about (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, WebService, WebServiceVersion, LivePaper, LivePaperVersion, BrainAtlas, BrainAtlasVersion, CommonCoordinateSpace, CommonCoordinateSpaceVersion) – no description available

• comment (str) – no description available

• commenter (Person) – no description available

• timestamp (datetime) – no description available

class Funding(acknowledgement=None, award_number=None, award_title=None, funded=None, funder=None, id=None, data=None, space=None, release_status=None)

Structured information on used funding.

Parameters:

• acknowledgement (str) – Official declaration or avowal of appreciation of an act or achievement.

• award_number (str) – Machine-readable identifier for a benefit that is conferred or bestowed on the basis of merit or need.

• award_title (str) – Human-readable identifier for a benefit that is conferred or bestowed on the basis of merit or need.

• funder (Consortium, Organization, Person) – Legal person that provides money for a particular purpose.

• funded (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, WebServiceVersion, Book, Chapter, LearningResource, LivePaperVersion, ScholarlyArticle, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘funding’

Identifiers

class DOI(describes=None, identifier=None, identifies=None, related_to=None, id=None, data=None, space=None, release_status=None)

Structured information about a digital object identifier, as standardized by the International Organization for Standardization.

Parameters:

• identifier (str) – Term or code used to identify the DOI.

• describes (BehavioralProtocol, Protocol) – reverse of ‘described_in’

• identifies (ValidationTest, WorkflowRecipe, Dataset, MetaDataModel, Model, Software, Electrode, ElectrodeArray, Pipette, Book, Chapter, LearningResource, LivePaper, ScholarlyArticle, BrainAtlas, CommonCoordinateSpace, SlicingDevice) – reverse of ‘digital_identifier’

• related_to (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, WebServiceVersion, LivePaperVersion, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘related_publications’

class GRIDID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)

A GRID (Global Research Identifier Database) identifier.

Parameters:

• identifier (str) – Term or code used to identify the GRIDID.

• identifies (Organization) – reverse of ‘digital_identifiers’

class HANDLE(identifier=None, related_to=None, id=None, data=None, space=None, release_status=None)

A persistent identifier for an information resource provided by the Handle System of the Corporation for National Research Initiatives.

Parameters:

• identifier (str) – Term or code used to identify the HANDLE.

• related_to (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, WebServiceVersion, LivePaperVersion, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘related_publications’

class ISBN(cited_in=None, identifier=None, identifies=None, related_to=None, id=None, data=None, space=None, release_status=None)

An International Standard Book Number of the International ISBN Agency.

Parameters:

• identifier (str) – Term or code used to identify the ISBN.

• cited_in (Chapter, LearningResource, ScholarlyArticle) – reverse of ‘cited_publications’

• identifies (Book, BrainAtlas, CommonCoordinateSpace) – reverse of ‘digital_identifier’

• related_to (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, WebServiceVersion, LivePaperVersion, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘related_publications’

class ISSN(identifier=None, identifies=None, related_to=None, id=None, data=None, space=None, release_status=None)

An International Standard Serial Number of the ISSN International Centre.

Parameters:

• identifier (str) – Term or code used to identify the ISSN.

• identifies (Periodical) – reverse of ‘digital_identifier’

• related_to (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, WebServiceVersion, LivePaperVersion, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘related_publications’

class ORCID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)

A persistent identifier for a researcher provided by Open Researcher and Contributor ID, Inc.

Parameters:

• identifier (str) – Term or code used to identify the ORCID.

• identifies (Person) – reverse of ‘digital_identifiers’

class RORID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)

A persistent identifier for a research organization, provided by the Research Organization Registry.

Parameters:

• identifier (str) – Term or code used to identify the RORID.

• identifies (Organization) – reverse of ‘digital_identifiers’

class RRID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)

A persistent identifier for a research resource provided by the Resource Identification Initiative.

Parameters:

• identifier (str) – Term or code used to identify the RRID.

• identifies (ProductSource, Organization, Software, SoftwareVersion, Strain, Electrode, ElectrodeArray, Pipette, BrainAtlas, BrainAtlasVersion, CommonCoordinateSpace, CommonCoordinateSpaceVersion, SlicingDevice) – reverse of ‘digital_identifier’

class SWHID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• identifier (str) – Term or code used to identify the SWHID.

• identifies (MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion) – reverse of ‘digital_identifier’

class StockNumber(identifier=None, vendor=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• identifier (str) – Term or code used to identify the stock number.

• vendor (Organization) – no description available

class WebResource(content_description=None, describes=None, format=None, fully_documents=None, iri=None, is_applied_to=None, is_output_of=None, is_reference_for=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• content_description (str) – no description available

• format (ContentType) – Method of digitally organizing and structuring data or information.

• iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.

• describes (BehavioralProtocol, Protocol) – reverse of ‘described_in’

• fully_documents (WorkflowRecipeVersion, MetaDataModelVersion, SoftwareVersion, WebServiceVersion, LivePaperVersion, BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘full_documentation’

• is_applied_to (DatasetVersion) – reverse of ‘license’

• is_output_of (ModelVersion) – reverse of ‘output_data’

• is_reference_for (ValidationTestVersion) – reverse of ‘reference_data’

Products

class Dataset(name=None, alias=None, authors=None, comments=None, custodians=None, description=None, digital_identifier=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, learning_resources=None, short_name=None, versions=None, id=None, data=None, space=None, release_status=None)

Structured information on data originating from human/animal studies or simulations (concept level).

Parameters:

• authors (Consortium, Organization, Person) – Creator of a literary or creative work, as well as a dataset publication.

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the dataset.

• digital_identifier (DOI, IdentifiersDotOrgID) – Digital handle to identify objects or legal persons.

• full_name (str) – Whole, non-abbreviated name of the dataset.

• has_versions (DatasetVersion) – Reference to variants of an original.

• homepage (IRI) – Main website of the dataset.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• short_name (str) – Shortened or fully abbreviated name of the dataset.

• comments (Comment) – reverse of ‘about’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• learning_resources (LearningResource) – reverse of ‘about’

class DatasetVersion(name=None, alias=None, accessibility=None, authors=None, behavioral_protocols=None, comments=None, copyright=None, custodians=None, data_types=None, description=None, digital_identifier=None, ethics_assessment=None, experimental_approaches=None, full_documentation=None, full_name=None, funding=None, has_parts=None, homepage=None, how_to_cite=None, input_data=None, is_alternative_version_of=None, is_input_to=None, is_new_version_of=None, is_old_version_of=None, is_part_of=None, is_version_of=None, keywords=None, learning_resources=None, license=None, other_contributions=None, preparation_designs=None, protocols=None, publication=None, related_publications=None, release_date=None, repository=None, short_name=None, studied_specimens=None, study_targets=None, support_channels=None, techniques=None, version_identifier=None, version_innovation=None, id=None, data=None, space=None, release_status=None)

Structured information on data originating from human/animal studies or simulations (version level).

Parameters:

• accessibility (ProductAccessibility) – Level to which something is accessible to the dataset version.

• authors (Consortium, Organization, Person) – Creator of a literary or creative work, as well as a dataset publication.

• behavioral_protocols (BehavioralProtocol) – no description available

• copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• data_types (SemanticDataType) – no description available

• description (str) – Longer statement or account giving the characteristics of the dataset version.

• digital_identifier (DOI, IdentifiersDotOrgID) – Digital handle to identify objects or legal persons.

• ethics_assessment (EthicsAssessment) – Judgment about the applied principles of conduct governing an individual or a group.

• experimental_approaches (ExperimentalApproach) – no description available

• full_documentation (DOI, File, ISBN, WebResource) – Non-abridged instructions, comments, and information for using a particular product.

• full_name (str) – Whole, non-abbreviated name of the dataset version.

• funding (Funding) – Money provided by a legal person for a particular purpose.

• homepage (IRI) – Main website of the dataset version.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• input_data (DOI, File, FileBundle, WebResource, BrainAtlas, BrainAtlasVersion, CommonCoordinateSpace, CommonCoordinateSpaceVersion) – Data that is put into a process or machine.

• is_alternative_version_of (DatasetVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.

• is_new_version_of (DatasetVersion) – Reference to a previous (potentially outdated) particular form of something.

• keywords (ActionStatusType, AgeCategory, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, EthicsAssessment, ExperimentalApproach, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIPulseSequence, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, MolecularEntity, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, PatchClampVariation, PreparationType, ProductAccessibility, ProgrammingLanguage, QualitativeOverlap, SemanticDataType, Service, SetupType, SoftwareApplicationCategory, SoftwareFeature, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TypeOfUncertainty, UBERONParcellation, UnitOfMeasurement, VisualStimulusType) – Significant word or concept that are representative of the dataset version.

• license (License, WebResource) – Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.

• other_contributions (Contribution) – Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.

• preparation_designs (PreparationType) – no description available

• protocols (Protocol) – Plan that describes the process of a scientific or medical experiment, treatment, or procedure.

• related_publications (DOI, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy

• repository (FileRepository) – Place, room, or container where something is deposited or stored.

• short_name (str) – Shortened or fully abbreviated name of the dataset version.

• studied_specimens (Subject, SubjectGroup, TissueSample, TissueSampleCollection) – no description available

• study_targets (AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, Disease, DiseaseModel, ElectricalStimulusType, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, UBERONParcellation, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• support_channels (str) – Way of communication used to interact with users or customers.

• techniques (AnalysisTechnique, MRIPulseSequence, MRIWeighting, StimulationApproach, StimulationTechnique, Technique) – Method of accomplishing a desired aim.

• version_identifier (str) – Term or code used to identify the version of something.

• version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.

• comments (Comment) – reverse of ‘about’

• has_parts (ProtocolExecution, CellPatching, ElectrodePlacement, RecordingActivity, CranialWindowPreparation, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of ‘is_part_of’

• is_input_to (DataCopy) – reverse of ‘inputs’

• is_old_version_of (DatasetVersion) – reverse of ‘is_new_version_of’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• is_version_of (Dataset) – reverse of ‘has_versions’

• learning_resources (LearningResource) – reverse of ‘about’

• publication (LivePaperVersion) – reverse of ‘about’

class Model(name=None, alias=None, abstraction_level=None, comments=None, custodians=None, description=None, developers=None, digital_identifier=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, learning_resources=None, model_scope=None, scope=None, short_name=None, study_targets=None, versions=None, id=None, data=None, space=None, release_status=None)

Structured information on a computational model (concept level).

Parameters:

• abstraction_level (ModelAbstractionLevel) – Extent of simplification of physical, spatial, or temporal details or attributes in the study of objects or systems.

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the model.

• developers (Consortium, Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).

• digital_identifier (DOI, SWHID) – Digital handle to identify objects or legal persons.

• full_name (str) – Whole, non-abbreviated name of the model.

• has_versions (ModelVersion) – Reference to variants of an original.

• homepage (IRI) – Main website of the model.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• scope (ModelScope) – Extent of something.

• short_name (str) – Shortened or fully abbreviated name of the model.

• study_targets (AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, Disease, DiseaseModel, ElectricalStimulusType, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, UBERONParcellation, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• comments (Comment) – reverse of ‘about’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• learning_resources (LearningResource) – reverse of ‘about’

class ModelVersion(name=None, alias=None, accessibility=None, comments=None, copyright=None, custodians=None, description=None, developers=None, digital_identifier=None, formats=None, full_documentation=None, full_name=None, funding=None, homepage=None, how_to_cite=None, input_data=None, is_alternative_version_of=None, is_input_to=None, is_location_of=None, is_new_version_of=None, is_old_version_of=None, is_output_of=None, is_part_of=None, is_version_of=None, keywords=None, learning_resources=None, licenses=None, other_contributions=None, output_data=None, publication=None, related_publications=None, release_date=None, repository=None, short_name=None, support_channels=None, version_identifier=None, version_innovation=None, id=None, data=None, space=None, release_status=None)

Structured information on a computational model (version level).

Parameters:

• accessibility (ProductAccessibility) – Level to which something is accessible to the model version.

• copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the model version.

• developers (Consortium, Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).

• digital_identifier (DOI, SWHID) – Digital handle to identify objects or legal persons.

• formats (ContentType) – Method of digitally organizing and structuring data or information.

• full_documentation (DOI, File, ISBN, WebResource) – Non-abridged instructions, comments, and information for using a particular product.

• full_name (str) – Whole, non-abbreviated name of the model version.

• funding (Funding) – Money provided by a legal person for a particular purpose.

• homepage (IRI) – Main website of the model version.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• input_data (DOI, File, FileBundle, WebResource) – Data that is put into a process or machine.

• is_alternative_version_of (ModelVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.

• is_new_version_of (ModelVersion) – Reference to a previous (potentially outdated) particular form of something.

• keywords (ActionStatusType, AgeCategory, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, EthicsAssessment, ExperimentalApproach, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIPulseSequence, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, MolecularEntity, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, PatchClampVariation, PreparationType, ProductAccessibility, ProgrammingLanguage, QualitativeOverlap, SemanticDataType, Service, SetupType, SoftwareApplicationCategory, SoftwareFeature, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TypeOfUncertainty, UBERONParcellation, UnitOfMeasurement, VisualStimulusType) – Significant word or concept that are representative of the model version.

• licenses (License) – Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.

• other_contributions (Contribution) – Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.

• output_data (DOI, File, FileBundle, WebResource) – Data that comes out of, is delivered or produced by a process or machine.

• related_publications (DOI, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy

• repository (FileRepository) – Place, room, or container where something is deposited or stored.

• short_name (str) – Shortened or fully abbreviated name of the model version.

• support_channels (str) – Way of communication used to interact with users or customers.

• version_identifier (str) – Term or code used to identify the version of something.

• version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.

• comments (Comment) – reverse of ‘about’

• is_input_to (DataCopy, ModelValidation, Simulation) – reverse of ‘inputs’

• is_location_of (ServiceLink) – reverse of ‘data_location’

• is_old_version_of (ModelVersion) – reverse of ‘is_new_version_of’

• is_output_of (Optimization) – reverse of ‘outputs’

• is_part_of (Project, ResearchProductGroup, SoftwareVersion) – reverse of ‘has_parts’

• is_version_of (Model) – reverse of ‘has_versions’

• learning_resources (LearningResource) – reverse of ‘about’

• publication (LivePaperVersion) – reverse of ‘about’

class Project(name=None, alias=None, coordinators=None, description=None, full_name=None, has_parts=None, homepage=None, short_name=None, id=None, data=None, space=None, release_status=None)

Structured information on a research project.

Parameters:

• coordinators (Consortium, Organization, Person) – Legal person who organizes the collaborative work of people or groups.

• description (str) – Longer statement or account giving the characteristics of the project.

• full_name (str) – Whole, non-abbreviated name of the project.

• has_parts (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, WebService, WebServiceVersion, LivePaper, LivePaperVersion, BrainAtlas, BrainAtlasVersion, CommonCoordinateSpace, CommonCoordinateSpaceVersion) – no description available

• homepage (IRI) – Main website of the project.

• short_name (str) – Shortened or fully abbreviated name of the project.

class Software(name=None, alias=None, comments=None, custodians=None, description=None, developers=None, digital_identifier=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, learning_resources=None, short_name=None, versions=None, id=None, data=None, space=None, release_status=None)

Structured information on a software tool (concept level).

Parameters:

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the software.

• developers (Consortium, Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).

• digital_identifier (DOI, RRID, SWHID) – Digital handle to identify objects or legal persons.

• full_name (str) – Whole, non-abbreviated name of the software.

• has_versions (SoftwareVersion) – Reference to variants of an original.

• homepage (IRI) – Main website of the software.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• short_name (str) – Shortened or fully abbreviated name of the software.

• comments (Comment) – reverse of ‘about’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• learning_resources (LearningResource) – reverse of ‘about’

class SoftwareVersion(name=None, alias=None, accessibility=None, application_categories=None, comments=None, copyright=None, custodians=None, description=None, developers=None, devices=None, digital_identifier=None, features=None, full_documentation=None, full_name=None, funding=None, has_parts=None, homepage=None, how_to_cite=None, input_formats=None, is_alternative_version_of=None, is_input_to=None, is_new_version_of=None, is_old_version_of=None, is_part_of=None, is_version_of=None, keywords=None, languages=None, learning_resources=None, licenses=None, operating_systems=None, other_contributions=None, output_formats=None, programming_languages=None, publication=None, related_publications=None, release_date=None, repository=None, requirements=None, short_name=None, support_channels=None, used_in=None, version_identifier=None, version_innovation=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• accessibility (ProductAccessibility) – Level to which something is accessible to the software version.

• application_categories (SoftwareApplicationCategory) – Distinct class that groups software programs which perform a similar task or set of tasks.

• copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the software version.

• developers (Consortium, Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).

• devices (OperatingDevice) – Piece of equipment or mechanism (hardware) designed to serve a special purpose or perform a special function.

• digital_identifier (DOI, SWHID, RRID) – Digital handle to identify objects or legal persons.

• features (SoftwareFeature) – Structure, form, or appearance that characterizes the software version.

• full_documentation (DOI, File, ISBN, WebResource) – Non-abridged instructions, comments, and information for using a particular product.

• full_name (str) – Whole, non-abbreviated name of the software version.

• funding (Funding) – Money provided by a legal person for a particular purpose.

• has_parts (ModelVersion, SoftwareVersion, BrainAtlasVersion, CommonCoordinateSpaceVersion) – no description available

• homepage (IRI) – Main website of the software version.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• input_formats (ContentType) – Format of data that is put into a process or machine.

• is_alternative_version_of (SoftwareVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.

• is_new_version_of (SoftwareVersion) – Reference to a previous (potentially outdated) particular form of something.

• keywords (ActionStatusType, AgeCategory, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, EthicsAssessment, ExperimentalApproach, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIPulseSequence, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, MolecularEntity, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, PatchClampVariation, PreparationType, ProductAccessibility, ProgrammingLanguage, QualitativeOverlap, SemanticDataType, Service, SetupType, SoftwareApplicationCategory, SoftwareFeature, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TypeOfUncertainty, UBERONParcellation, UnitOfMeasurement, VisualStimulusType) – Significant word or concept that are representative of the software version.

• languages (Language) – System of communication (words, their pronunciation, and the methods of combining them) used and understood by a particular community.

• licenses (License) – Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.

• operating_systems (OperatingSystem) – Software that controls the operation of a computer and directs the processing of programs.

• other_contributions (Contribution) – Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.

• output_formats (ContentType) – Format of data that comes out of, is delivered or produced by a process or machine.

• programming_languages (ProgrammingLanguage) – Distinct set of instructions for computer programs in order to produce various kinds of output.

• related_publications (DOI, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy

• repository (FileRepository) – Place, room, or container where something is deposited or stored.

• requirements (str) – Something essential to the existence, occurrence or function of something else.

• short_name (str) – Shortened or fully abbreviated name of the software version.

• support_channels (str) – Way of communication used to interact with users or customers.

• version_identifier (str) – Term or code used to identify the version of something.

• version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.

• comments (Comment) – reverse of ‘about’

• is_input_to (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘inputs’

• is_old_version_of (SoftwareVersion) – reverse of ‘is_new_version_of’

• is_part_of (WorkflowRecipeVersion, Project, ResearchProductGroup, Setup, WebServiceVersion) – reverse of ‘has_parts’

• is_version_of (Software) – reverse of ‘has_versions’

• learning_resources (LearningResource) – reverse of ‘about’

• publication (LivePaperVersion) – reverse of ‘about’

• used_in (Environment, SoftwareAgent) – reverse of ‘software’

class MetaDataModel(name=None, alias=None, comments=None, custodians=None, description=None, developers=None, digital_identifier=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, learning_resources=None, short_name=None, versions=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the meta data model.

• developers (Consortium, Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).

• digital_identifier (DOI, SWHID) – Digital handle to identify objects or legal persons.

• full_name (str) – Whole, non-abbreviated name of the meta data model.

• has_versions (MetaDataModelVersion) – Reference to variants of an original.

• homepage (IRI) – Main website of the meta data model.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• short_name (str) – Shortened or fully abbreviated name of the meta data model.

• comments (Comment) – reverse of ‘about’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• learning_resources (LearningResource) – reverse of ‘about’

class MetaDataModelVersion(name=None, alias=None, accessibility=None, comments=None, copyright=None, custodians=None, description=None, developers=None, digital_identifier=None, full_documentation=None, full_name=None, funding=None, homepage=None, how_to_cite=None, is_alternative_version_of=None, is_new_version_of=None, is_old_version_of=None, is_part_of=None, is_version_of=None, keywords=None, learning_resources=None, license=None, other_contributions=None, related_publications=None, release_date=None, repository=None, serialization_formats=None, short_name=None, specification_formats=None, support_channels=None, type=None, version_identifier=None, version_innovation=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• accessibility (ProductAccessibility) – Level to which something is accessible to the meta data model version.

• copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the meta data model version.

• developers (Consortium, Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).

• digital_identifier (DOI, SWHID) – Digital handle to identify objects or legal persons.

• full_documentation (DOI, File, ISBN, WebResource) – Non-abridged instructions, comments, and information for using a particular product.

• full_name (str) – Whole, non-abbreviated name of the meta data model version.

• funding (Funding) – Money provided by a legal person for a particular purpose.

• homepage (IRI) – Main website of the meta data model version.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• is_alternative_version_of (MetaDataModelVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.

• is_new_version_of (MetaDataModelVersion) – Reference to a previous (potentially outdated) particular form of something.

• keywords (ActionStatusType, AgeCategory, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, EthicsAssessment, ExperimentalApproach, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIPulseSequence, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, MolecularEntity, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, PatchClampVariation, PreparationType, ProductAccessibility, ProgrammingLanguage, QualitativeOverlap, SemanticDataType, Service, SetupType, SoftwareApplicationCategory, SoftwareFeature, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TypeOfUncertainty, UBERONParcellation, UnitOfMeasurement, VisualStimulusType) – Significant word or concept that are representative of the meta data model version.

• license (License) – Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.

• other_contributions (Contribution) – Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.

• related_publications (DOI, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy

• repository (FileRepository) – Place, room, or container where something is deposited or stored.

• serialization_formats (ContentType) – Form in which a particular data structure or object state is translated to for storage.

• short_name (str) – Shortened or fully abbreviated name of the meta data model version.

• specification_formats (ContentType) – Form in which a particular data structure or object state is specified in.

• support_channels (str) – Way of communication used to interact with users or customers.

• type (MetaDataModelType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.

• version_identifier (str) – Term or code used to identify the version of something.

• version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.

• comments (Comment) – reverse of ‘about’

• is_old_version_of (MetaDataModelVersion) – reverse of ‘is_new_version_of’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• is_version_of (MetaDataModel) – reverse of ‘has_versions’

• learning_resources (LearningResource) – reverse of ‘about’

class WebService(name=None, alias=None, comments=None, custodians=None, description=None, developers=None, full_name=None, has_accounts=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, learning_resources=None, short_name=None, versions=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the web service.

• developers (Consortium, Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).

• full_name (str) – Whole, non-abbreviated name of the web service.

• has_versions (WebServiceVersion) – Reference to variants of an original.

• homepage (IRI) – Main website of the web service.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• short_name (str) – Shortened or fully abbreviated name of the web service.

• comments (Comment) – reverse of ‘about’

• has_accounts (AccountInformation) – reverse of ‘service’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• learning_resources (LearningResource) – reverse of ‘about’

class WebServiceVersion(name=None, alias=None, accessibility=None, comments=None, copyright=None, custodians=None, description=None, developers=None, full_documentation=None, full_name=None, funding=None, has_parts=None, homepage=None, how_to_cite=None, input_formats=None, is_alternative_version_of=None, is_new_version_of=None, is_old_version_of=None, is_part_of=None, is_version_of=None, keywords=None, learning_resources=None, other_contributions=None, output_formats=None, related_publications=None, release_date=None, repository=None, short_name=None, support_channels=None, used_for=None, version_identifier=None, version_innovation=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• accessibility (ProductAccessibility) – Level to which something is accessible to the web service version.

• copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.

• custodians (Consortium, Organization, Person) – The ‘custodian’ is a legal person who is responsible for the content and quality of the data, metadata, and/or code of a research product.

• description (str) – Longer statement or account giving the characteristics of the web service version.

• developers (Consortium, Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).

• full_documentation (DOI, File, ISBN, WebResource) – Non-abridged instructions, comments, and information for using a particular product.

• full_name (str) – Whole, non-abbreviated name of the web service version.

• funding (Funding) – Money provided by a legal person for a particular purpose.

• has_parts (SoftwareVersion) – no description available

• homepage (IRI) – Main website of the web service version.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• input_formats (ContentType) – Format of data that is put into a process or machine.

• is_alternative_version_of (WebServiceVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.

• is_new_version_of (WebServiceVersion) – Reference to a previous (potentially outdated) particular form of something.

• keywords (ActionStatusType, AgeCategory, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, EthicsAssessment, ExperimentalApproach, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIPulseSequence, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, MolecularEntity, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, PatchClampVariation, PreparationType, ProductAccessibility, ProgrammingLanguage, QualitativeOverlap, SemanticDataType, Service, SetupType, SoftwareApplicationCategory, SoftwareFeature, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TypeOfUncertainty, UBERONParcellation, UnitOfMeasurement, VisualStimulusType) – Significant word or concept that are representative of the web service version.

• other_contributions (Contribution) – Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.

• output_formats (ContentType) – Format of data that comes out of, is delivered or produced by a process or machine.

• related_publications (DOI, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy

• repository (FileRepository) – Place, room, or container where something is deposited or stored.

• short_name (str) – Shortened or fully abbreviated name of the web service version.

• support_channels (str) – Way of communication used to interact with users or customers.

• version_identifier (str) – Term or code used to identify the version of something.

• version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.

• comments (Comment) – reverse of ‘about’

• is_old_version_of (WebServiceVersion) – reverse of ‘is_new_version_of’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• is_version_of (WebService) – reverse of ‘has_versions’

• learning_resources (LearningResource) – reverse of ‘about’

• used_for (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘environment’

class ResearchProductGroup(context=None, has_parts=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• context (str) – no description available

• has_parts (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, WebService, WebServiceVersion, LivePaper, LivePaperVersion, BrainAtlas, BrainAtlasVersion, CommonCoordinateSpace, CommonCoordinateSpaceVersion) – no description available

Research

class BehavioralProtocol(name=None, described_in=None, description=None, internal_identifier=None, is_used_to_group=None, stimulations=None, stimulus_types=None, used_in=None, id=None, data=None, space=None, release_status=None)

Structured information about a protocol used in an experiment studying human or animal behavior.

Parameters:

• described_in (DOI, File, WebResource) – no description available

• description (str) – Longer statement or account giving the characteristics of the behavioral protocol.

• internal_identifier (str) – Term or code that identifies the behavioral protocol within a particular product.

• name (str) – Word or phrase that constitutes the distinctive designation of the behavioral protocol.

• stimulations (StimulationApproach, StimulationTechnique) – no description available

• stimulus_types (AuditoryStimulusType, ElectricalStimulusType, GustatoryStimulusType, OlfactoryStimulusType, OpticalStimulusType, TactileStimulusType, VisualStimulusType) – no description available

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

• used_in (DatasetVersion, ProtocolExecution) – reverse of ‘behavioral_protocols’

class Protocol(name=None, described_in=None, description=None, stimulus_types=None, techniques=None, used_in=None, id=None, data=None, space=None, release_status=None)

Structured information on a research project.

Parameters:

• described_in (DOI, File, WebResource) – no description available

• description (str) – Longer statement or account giving the characteristics of the protocol.

• name (str) – Word or phrase that constitutes the distinctive designation of the protocol.

• stimulus_types (AuditoryStimulusType, ElectricalStimulusType, GustatoryStimulusType, OlfactoryStimulusType, OpticalStimulusType, TactileStimulusType, VisualStimulusType) – no description available

• techniques (AnalysisTechnique, MRIPulseSequence, MRIWeighting, StimulationApproach, StimulationTechnique, Technique) – Method of accomplishing a desired aim.

• used_in (DatasetVersion, ProtocolExecution, CellPatching, ElectrodePlacement, RecordingActivity, CranialWindowPreparation, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of ‘protocols’

class ProtocolExecution(lookup_label=None, based_on_protocol_execution=None, behavioral_protocols=None, custom_property_sets=None, description=None, end_time=None, inputs=None, is_part_of=None, outputs=None, performed_by=None, preparation_design=None, protocols=None, start_time=None, study_targets=None, id=None, data=None, space=None, release_status=None)

Structured information on a protocol execution.

Parameters:

• behavioral_protocols (BehavioralProtocol) – no description available

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the protocol execution.

• end_time (datetime, time) – no description available

• inputs (File, FileBundle, SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState, BrainAtlasVersion, CommonCoordinateSpaceVersion) – Something or someone that is put into or participates in a process or machine.

• is_part_of (DatasetVersion) – Reference to the ensemble of multiple things or beings.

• lookup_label (str) – no description available

• outputs (File, FileBundle, SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• preparation_design (PreparationType) – no description available

• protocols (Protocol) – Plan that describes the process of a scientific or medical experiment, treatment, or procedure.

• start_time (datetime, time) – no description available

• study_targets (AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, Disease, DiseaseModel, ElectricalStimulusType, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, UBERONParcellation, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• based_on_protocol_execution (AtlasAnnotation, CustomAnnotation) – reverse of ‘criteria’

class Setup(name=None, description=None, has_parts=None, is_part_of=None, location=None, manufacturers=None, types=None, used_in=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• description (str) – Longer statement or account giving the characteristics of the setup.

• has_parts (Setup, SoftwareVersion, Electrode, ElectrodeArray, Pipette, SlicingDevice) – no description available

• location (str) – no description available

• manufacturers (Consortium, Organization, Person) – no description available

• name (str) – Word or phrase that constitutes the distinctive designation of the setup.

• types (SetupType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.

• is_part_of (Setup) – reverse of ‘has_parts’

• used_in (StimulationActivity) – reverse of ‘setup’

class Strain(name=None, alternate_identifiers=None, background_strains=None, breeding_type=None, description=None, digital_identifier=None, disease_models=None, genetic_strain_type=None, is_background_strain_of=None, is_species_of=None, laboratory_code=None, ontology_identifiers=None, phenotype=None, species=None, stock_number=None, synonyms=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• alternate_identifiers (str) – no description available

• background_strains (Strain) – no description available

• breeding_type (BreedingType) – no description available

• description (str) – Longer statement or account giving the characteristics of the strain.

• digital_identifier (RRID) – Digital handle to identify objects or legal persons.

• disease_models (Disease, DiseaseModel) – no description available

• genetic_strain_type (GeneticStrainType) – no description available

• laboratory_code (str) – no description available

• name (str) – Word or phrase that constitutes the distinctive designation of the strain.

• ontology_identifiers (str) – Term or code used to identify the strain registered within a particular ontology.

• phenotype (str) – Physical expression of one or more genes of an organism.

• species (Species) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.

• stock_number (StockNumber) – no description available

• synonyms (str) – Words or expressions used in the same language that have the same or nearly the same meaning in some or all senses.

• is_background_strain_of (Strain) – reverse of ‘background_strains’

• is_species_of (Subject, SubjectGroup, TissueSample, TissueSampleCollection) – reverse of ‘species’

class Subject(lookup_label=None, biological_sex=None, has_study_results_in=None, internal_identifier=None, is_part_of=None, is_used_to_group=None, species=None, studied_states=None, used_in=None, id=None, data=None, space=None, release_status=None)

Structured information on a subject.

Parameters:

• biological_sex (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.

• internal_identifier (str) – Term or code that identifies the subject within a particular product.

• is_part_of (SubjectGroup) – Reference to the ensemble of multiple things or beings.

• lookup_label (str) – no description available

• species (Species, Strain) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.

• studied_states (SubjectState) – Reference to a point in time at which the subject was studied in a particular mode or condition.

• has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

• used_in (BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘used_specimens’

class SubjectGroup(lookup_label=None, additional_remarks=None, biological_sexes=None, has_parts=None, has_study_results_in=None, internal_identifier=None, is_used_to_group=None, number_of_subjects=None, species=None, studied_states=None, used_in=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• biological_sexes (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.

• internal_identifier (str) – Term or code that identifies the subject group within a particular product.

• lookup_label (str) – no description available

• number_of_subjects (int) – no description available

• species (Species, Strain) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.

• studied_states (SubjectGroupState) – Reference to a point in time at which the subject group was studied in a particular mode or condition.

• has_parts (Subject) – reverse of ‘is_part_of’

• has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

• used_in (BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘used_specimens’

class SubjectGroupState(lookup_label=None, additional_remarks=None, age=None, age_categories=None, attributes=None, descended_from=None, handedness=None, has_children=None, internal_identifier=None, is_input_to=None, is_output_of=None, is_state_of=None, is_used_to_group=None, pathologies=None, relative_time_indication=None, weight=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.

• age_categories (AgeCategory) – Distinct life cycle class that is defined by a similar age or age range (developmental stage) within a group of individual beings.

• attributes (SubjectAttribute) – no description available

• descended_from (SubjectGroupState) – no description available

• handedness (Handedness) – Degree to which an organism prefers one hand or foot over the other hand or foot during the performance of a task.

• internal_identifier (str) – Term or code that identifies the subject group state within a particular product.

• lookup_label (str) – no description available

• pathologies (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.

• relative_time_indication (QuantitativeValue, QuantitativeValueRange) – no description available

• weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.

• has_children (SubjectGroupState, TissueSampleCollectionState, TissueSampleState) – reverse of ‘descended_from’

• is_input_to (RecordingActivity, TissueCulturePreparation) – reverse of ‘inputs’

• is_output_of (ProtocolExecution, StimulationActivity) – reverse of ‘outputs’

• is_state_of (SubjectGroup) – reverse of ‘studied_states’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

class SubjectState(lookup_label=None, additional_remarks=None, age=None, age_category=None, attributes=None, descended_from=None, handedness=None, has_children=None, internal_identifier=None, is_input_to=None, is_output_of=None, is_state_of=None, is_used_to_group=None, pathologies=None, relative_time_indication=None, used_in=None, weight=None, id=None, data=None, space=None, release_status=None)

Structured information on a temporary state of a subject.

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.

• age_category (AgeCategory) – Distinct life cycle class that is defined by a similar age or age range (developmental stage) within a group of individual beings.

• attributes (SubjectAttribute) – no description available

• descended_from (SubjectState) – no description available

• handedness (Handedness) – Degree to which an organism prefers one hand or foot over the other hand or foot during the performance of a task.

• internal_identifier (str) – Term or code that identifies the subject state within a particular product.

• lookup_label (str) – no description available

• pathologies (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.

• relative_time_indication (QuantitativeValue, QuantitativeValueRange) – no description available

• weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.

• has_children (SubjectState, TissueSampleCollectionState, TissueSampleState) – reverse of ‘descended_from’

• is_input_to (RecordingActivity, TissueCulturePreparation, TissueSampleSlicing) – reverse of ‘inputs’

• is_output_of (ProtocolExecution, CellPatching, ElectrodePlacement, CranialWindowPreparation, StimulationActivity) – reverse of ‘outputs’

• is_state_of (Subject) – reverse of ‘studied_states’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

• used_in (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, SlicingDeviceUsage) – reverse of ‘used_specimen’

class TissueSample(lookup_label=None, anatomical_locations=None, biological_sex=None, has_study_results_in=None, internal_identifier=None, is_part_of=None, is_used_to_group=None, lateralities=None, origin=None, species=None, studied_states=None, type=None, used_in=None, id=None, data=None, space=None, release_status=None)

Structured information on a tissue sample.

Parameters:

• anatomical_locations (CellType, Organ, OrganismSubstance, SubcellularEntity, UBERONParcellation, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – no description available

• biological_sex (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.

• internal_identifier (str) – Term or code that identifies the tissue sample within a particular product.

• is_part_of (TissueSampleCollection) – Reference to the ensemble of multiple things or beings.

• lateralities (Laterality) – Differentiation between a pair of lateral homologous parts of the body.

• lookup_label (str) – no description available

• origin (CellType, Organ, OrganismSubstance) – Source at which something begins or rises, or from which something derives.

• species (Species, Strain) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.

• studied_states (TissueSampleState) – Reference to a point in time at which the tissue sample was studied in a particular mode or condition.

• type (TissueSampleType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.

• has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

• used_in (BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘used_specimens’

class TissueSampleCollection(lookup_label=None, additional_remarks=None, anatomical_locations=None, biological_sexes=None, has_parts=None, has_study_results_in=None, internal_identifier=None, is_used_to_group=None, lateralities=None, number_of_tissue_samples=None, origins=None, species=None, studied_states=None, types=None, used_in=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• anatomical_locations (CellType, Organ, OrganismSubstance, SubcellularEntity, UBERONParcellation, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – no description available

• biological_sexes (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.

• internal_identifier (str) – Term or code that identifies the tissue sample collection within a particular product.

• lateralities (Laterality) – Differentiation between a pair of lateral homologous parts of the body.

• lookup_label (str) – no description available

• number_of_tissue_samples (int) – no description available

• origins (CellType, Organ, OrganismSubstance) – Source at which something begins or rises, or from which something derives.

• species (Species, Strain) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.

• studied_states (TissueSampleCollectionState) – Reference to a point in time at which the tissue sample collection was studied in a particular mode or condition.

• types (TissueSampleType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.

• has_parts (TissueSample) – reverse of ‘is_part_of’

• has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

• used_in (BrainAtlasVersion, CommonCoordinateSpaceVersion) – reverse of ‘used_specimens’

class TissueSampleCollectionState(lookup_label=None, additional_remarks=None, age=None, attributes=None, descended_from=None, has_children=None, internal_identifier=None, is_input_to=None, is_output_of=None, is_state_of=None, is_used_to_group=None, pathologies=None, relative_time_indication=None, weight=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.

• attributes (TissueSampleAttribute) – no description available

• descended_from (SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – no description available

• internal_identifier (str) – Term or code that identifies the tissue sample collection state within a particular product.

• lookup_label (str) – no description available

• pathologies (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.

• relative_time_indication (QuantitativeValue, QuantitativeValueRange) – no description available

• weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.

• has_children (TissueSampleCollectionState, TissueSampleState) – reverse of ‘descended_from’

• is_input_to (RecordingActivity, TissueCulturePreparation) – reverse of ‘inputs’

• is_output_of (ProtocolExecution, TissueSampleSlicing, StimulationActivity) – reverse of ‘outputs’

• is_state_of (TissueSampleCollection) – reverse of ‘studied_states’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

class TissueSampleState(lookup_label=None, additional_remarks=None, age=None, attributes=None, descended_from=None, has_children=None, internal_identifier=None, is_input_to=None, is_output_of=None, is_state_of=None, is_used_to_group=None, pathologies=None, relative_time_indication=None, used_in=None, weight=None, id=None, data=None, space=None, release_status=None)

Structured information on a temporary state of a tissue sample.

Parameters:

• additional_remarks (str) – Mention of what deserves additional attention or notice.

• age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.

• attributes (TissueSampleAttribute) – no description available

• descended_from (SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – no description available

• internal_identifier (str) – Term or code that identifies the tissue sample state within a particular product.

• lookup_label (str) – no description available

• pathologies (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.

• relative_time_indication (QuantitativeValue, QuantitativeValueRange) – no description available

• weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.

• has_children (TissueSampleCollectionState, TissueSampleState) – reverse of ‘descended_from’

• is_input_to (RecordingActivity) – reverse of ‘inputs’

• is_output_of (ProtocolExecution, CellPatching, ElectrodePlacement, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of ‘outputs’

• is_state_of (TissueSample) – reverse of ‘studied_states’

• is_used_to_group (FileBundle) – reverse of ‘grouped_by’

• used_in (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, SlicingDeviceUsage) – reverse of ‘used_specimen’

class Configuration(lookup_label=None, configuration=None, format=None, is_configuration_of=None, specifies=None, id=None, data=None, space=None, release_status=None)

Structured information about the properties or parameters of an entity or process.

Parameters:

• configuration (str) – no description available

• format (ContentType) – Method of digitally organizing and structuring data or information.

• lookup_label (str) – no description available

• is_configuration_of (Environment, ValidationTestVersion, WorkflowExecution) – reverse of ‘configuration’

• specifies (EphysStimulus) – reverse of ‘specifications’

class CustomPropertySet(context=None, data_location=None, relevant_for=None, id=None, data=None, space=None, release_status=None)

Bases: KGEmbedded, CustomPropertySet

Structured information about properties of an entity that are not represented in an openMINDS schema.

Parameters:

• context (str) – no description available

• data_location (Configuration, File, PropertyValueList) – no description available

• relevant_for (AnalysisTechnique, MRIPulseSequence, MRIWeighting, StimulationApproach, StimulationTechnique, Technique) – Reference to what or whom the custom property set bears significance.

class PropertyValueList(lookup_label=None, defines_environment_of=None, is_configuration_of=None, property_value_pairs=None, specifies=None, id=None, data=None, space=None, release_status=None)

An identifiable list of property-value pairs.

Parameters:

• lookup_label (str) – no description available

• property_value_pairs (NumericalProperty, StringProperty) – no description available

• defines_environment_of (LaunchConfiguration) – reverse of ‘environment_variable’

• is_configuration_of (ValidationTestVersion) – reverse of ‘configuration’

• specifies (CustomAnnotation, EphysStimulus) – reverse of ‘specification’

class StringProperty(name=None, value=None, id=None, data=None, space=None, release_status=None)

<description not available>

Parameters:

• name (str) – Word or phrase that constitutes the distinctive designation of the string property.

• value (str) – Entry for a property.

class NumericalProperty(name=None, values=None, id=None, data=None, space=None, release_status=None)

Structured information about a property of some entity or process whose value is a number.

Parameters:

• name (str) – Word or phrase that constitutes the distinctive designation of the numerical property.

• values (QuantitativeValue, QuantitativeValueRange) – Entry for a property.