openminds.stimulation

In-depth metadata about stimulation protocols in neuroscience experiments. Note that this module is currently rather minimal; substantial extensions are planned.

class StimulationActivity(lookup_label=None, custom_property_sets=None, description=None, end_time=None, inputs=None, is_part_of=None, outputs=None, performed_by=None, preparation_design=None, protocols=None, setup=None, start_time=None, stimuli=None, study_targets=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, StimulationActivity

<description not available>

Parameters:

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the stimulation activity.

• end_time (datetime, time) – no description available

• inputs (SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – Something or someone that is put into or participates in a process or machine.

• is_part_of (DatasetVersion) – Reference to the ensemble of multiple things or beings.

• lookup_label (str) – no description available

• outputs (File, FileBundle, SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• preparation_design (PreparationType) – no description available

• protocols (Protocol) – Plan that describes the process of a scientific or medical experiment, treatment, or procedure.

• setup (Setup) – no description available

• start_time (datetime, time) – no description available

• stimuli (EphysStimulus) – no description available

• study_targets (AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, Disease, DiseaseModel, ElectricalStimulusType, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganismSubstance, OrganismSystem, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, UBERONParcellation, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

class EphysStimulus(lookup_label=None, delivered_by=None, description=None, epoch=None, generated_by=None, internal_identifier=None, is_stimulus_for=None, specifications=None, type=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, EphysStimulus

<description not available>

Parameters:

• delivered_by (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, SlicingDeviceUsage) – no description available

• description (str) – Longer statement or account giving the characteristics of the ephys stimulus.

• epoch (QuantitativeValue) – no description available

• generated_by (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, SlicingDeviceUsage) – no description available

• internal_identifier (str) – Term or code that identifies the ephys stimulus within a particular product.

• lookup_label (str) – no description available

• specifications (Configuration, File, FileBundle, PropertyValueList) – Detailed and precise presentation of, or proposal for something.

• type (ElectricalStimulusType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.

• is_stimulus_for (StimulationActivity) – reverse of ‘stimuli’