openminds.v5.computation

Provenance of computational workflows in neuroscience, including simulations, data analysis and visualizations.

class Environment(name=None, configuration=None, description=None, hardware=None, software=None, used_for=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, Environment

Structured information on the computer system or set of systems in which a computation is deployed and executed.

Parameters:

• configuration (Configuration) – no description available

• description (str) – Longer statement or account giving the characteristics of the environment.

• hardware (HardwareSystem) – no description available

• name (str) – Word or phrase that constitutes the distinctive designation of the environment.

• software (SoftwareVersion) – no description available

• used_for (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, SoftwareAgent, Visualization) – reverse of ‘environment’

class HardwareSystem(name=None, description=None, used_by=None, version_identifier=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, HardwareSystem

Structured information about computing hardware.

Parameters:

• description (str) – Longer statement or account giving the characteristics of the hardware system.

• name (str) – Word or phrase that constitutes the distinctive designation of the hardware system.

• version_identifier (str) – Term or code used to identify the version of something.

• used_by (Environment) – reverse of ‘hardware’

class LaunchConfiguration(name=None, arguments=None, description=None, environment_variable=None, environment_variables=None, executable=None, is_launch_configuration_of=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, LaunchConfiguration

Structured information about the launch of a computational process.

Parameters:

• arguments (str) – no description available

• description (str) – Longer statement or account giving the characteristics of the launch configuration.

• environment_variable (PropertyValueList) – no description available

• executable (str) – no description available

• name (str) – Word or phrase that constitutes the distinctive designation of the launch configuration.

• is_launch_configuration_of (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘launch_configuration’

class DataAnalysis(lookup_label=None, custom_property_sets=None, description=None, end_time=None, environment=None, informed=None, inputs=None, is_part_of=None, launch_configuration=None, outputs=None, performed_by=None, recipe=None, resource_usages=None, start_time=None, started_by=None, status=None, study_targets=None, tags=None, techniques=None, was_informed_by=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, DataAnalysis

Structured information on inspecting, cleansing, transforming, and modelling data.

Parameters:

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the data analysis.

• end_time (datetime, time) – no description available

• environment (Environment, Service) – no description available

• inputs (LocalFile, File, FileBundle, SoftwareVersion, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – Something or someone that is put into or participates in a process or machine.

• launch_configuration (LaunchConfiguration) – no description available

• lookup_label (str) – no description available

• outputs (LocalFile, File, FileArchive, FileBundle) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• recipe (WorkflowRecipeVersion) – no description available

• resource_usages (QuantitativeValue, QuantitativeValueRange) – no description available

• start_time (datetime, time) – no description available

• started_by (SoftwareAgent, Person) – no description available

• status (ActionStatusType) – no description available

• study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• tags (str) – no description available

• techniques (AnalysisTechnique) – Method of accomplishing a desired aim.

• was_informed_by (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – no description available

• informed (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘was_informed_by’

• is_part_of (WorkflowExecution) – reverse of ‘stages’

class DataCopy(lookup_label=None, custom_property_sets=None, description=None, end_time=None, environment=None, informed=None, inputs=None, is_part_of=None, launch_configuration=None, outputs=None, performed_by=None, recipe=None, resource_usages=None, start_time=None, started_by=None, status=None, study_targets=None, tags=None, techniques=None, was_informed_by=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, DataCopy

<description not available>

Parameters:

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the data copy.

• end_time (datetime, time) – no description available

• environment (Environment, Service) – no description available

• inputs (LocalFile, ValidationTestVersion, DatasetVersion, File, FileBundle, ModelVersion, SoftwareVersion) – Something or someone that is put into or participates in a process or machine.

• launch_configuration (LaunchConfiguration) – no description available

• lookup_label (str) – no description available

• outputs (LocalFile, File, FileBundle) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• recipe (WorkflowRecipeVersion) – no description available

• resource_usages (QuantitativeValue, QuantitativeValueRange) – no description available

• start_time (datetime, time) – no description available

• started_by (SoftwareAgent, Person) – no description available

• status (ActionStatusType) – no description available

• study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• tags (str) – no description available

• techniques (AnalysisTechnique) – Method of accomplishing a desired aim.

• was_informed_by (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – no description available

• informed (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘was_informed_by’

• is_part_of (WorkflowExecution) – reverse of ‘stages’

class DeployedInterface(accessibility=None, entry_point=None, interface=None, id=None, data=None, space=None, release_status=None)

Bases: KGEmbedded, DeployedInterface

<description not available>

Parameters:

• accessibility (Accessibility) – Level to which something is accessible to the deployed interface.

• entry_point (WebResource) – no description available

• interface (InterfaceVersion) – no description available

class GenericComputation(lookup_label=None, custom_property_sets=None, description=None, end_time=None, environment=None, informed=None, inputs=None, is_part_of=None, launch_configuration=None, outputs=None, performed_by=None, recipe=None, resource_usages=None, start_time=None, started_by=None, status=None, study_targets=None, tags=None, techniques=None, was_informed_by=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, GenericComputation

Structured information about a computation whose type is unknown or unspecified.

Parameters:

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the generic computation.

• end_time (datetime, time) – no description available

• environment (Environment, Service) – no description available

• inputs (LocalFile, File, FileBundle, SoftwareVersion) – Something or someone that is put into or participates in a process or machine.

• launch_configuration (LaunchConfiguration) – no description available

• lookup_label (str) – no description available

• outputs (LocalFile, File, FileArchive, FileBundle) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• recipe (WorkflowRecipeVersion) – no description available

• resource_usages (QuantitativeValue, QuantitativeValueRange) – no description available

• start_time (datetime, time) – no description available

• started_by (SoftwareAgent, Person) – no description available

• status (ActionStatusType) – no description available

• study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• tags (str) – no description available

• techniques (AnalysisTechnique) – Method of accomplishing a desired aim.

• was_informed_by (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – no description available

• informed (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘was_informed_by’

• is_part_of (WorkflowExecution) – reverse of ‘stages’

class Simulation(lookup_label=None, custom_property_sets=None, description=None, end_time=None, environment=None, informed=None, inputs=None, is_part_of=None, launch_configuration=None, outputs=None, performed_by=None, recipe=None, resource_usages=None, start_time=None, started_by=None, status=None, study_targets=None, tags=None, techniques=None, was_informed_by=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, Simulation

Structured information about a process of running simulations of a computational model.

Parameters:

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the simulation.

• end_time (datetime, time) – no description available

• environment (Environment, Service) – no description available

• inputs (LocalFile, File, FileBundle, ModelVersion, SoftwareVersion) – Something or someone that is put into or participates in a process or machine.

• launch_configuration (LaunchConfiguration) – no description available

• lookup_label (str) – no description available

• outputs (LocalFile, File, FileArchive, FileBundle) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• recipe (WorkflowRecipeVersion) – no description available

• resource_usages (QuantitativeValue, QuantitativeValueRange) – no description available

• start_time (datetime, time) – no description available

• started_by (SoftwareAgent, Person) – no description available

• status (ActionStatusType) – no description available

• study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• tags (str) – no description available

• techniques (AnalysisTechnique) – Method of accomplishing a desired aim.

• was_informed_by (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – no description available

• informed (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘was_informed_by’

• is_part_of (WorkflowExecution) – reverse of ‘stages’

class ModelValidation(lookup_label=None, custom_property_sets=None, description=None, end_time=None, environment=None, informed=None, inputs=None, is_part_of=None, launch_configuration=None, outputs=None, performed_by=None, recipe=None, resource_usages=None, score=None, start_time=None, started_by=None, status=None, study_targets=None, tags=None, techniques=None, was_informed_by=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, ModelValidation

Structured information about a process of validating a computational model.

Parameters:

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the model validation.

• end_time (datetime, time) – no description available

• environment (Environment, Service) – no description available

• inputs (LocalFile, ValidationTestVersion, File, FileBundle, ModelVersion, SoftwareVersion) – Something or someone that is put into or participates in a process or machine.

• launch_configuration (LaunchConfiguration) – no description available

• lookup_label (str) – no description available

• outputs (LocalFile, File, FileBundle) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• recipe (WorkflowRecipeVersion) – no description available

• resource_usages (QuantitativeValue, QuantitativeValueRange) – no description available

• score (Real) – no description available

• start_time (datetime, time) – no description available

• started_by (SoftwareAgent, Person) – no description available

• status (ActionStatusType) – no description available

• study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• tags (str) – no description available

• techniques (AnalysisTechnique) – Method of accomplishing a desired aim.

• was_informed_by (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – no description available

• informed (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘was_informed_by’

• is_part_of (WorkflowExecution) – reverse of ‘stages’

class ValidationTest(name=None, alias=None, comments=None, contributions=None, contributor_affiliations=None, description=None, digital_identifier=None, documentation=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, keywords=None, learning_resources=None, model_scope=None, reference_data_acquisitions=None, related_publications=None, scope=None, score_type=None, short_name=None, study_targets=None, support_channels=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, ValidationTest

Structured information about the definition of a process for validating a computational model.

Parameters:

• contributions (Contribution) – no description available

• contributor_affiliations (Affiliation) – no description available

• description (str) – Longer statement or account giving the characteristics of the validation test.

• digital_identifier (DOI) – Digital handle to identify objects or legal persons.

• documentation (DOI, File, ISBN, WebResource) – no description available

• full_name (str) – Whole, non-abbreviated name of the validation test.

• homepage (IRI) – Main website of the validation test.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the validation test.

• reference_data_acquisitions (Technique) – no description available

• related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• scope (ModelScope) – Extent of something.

• score_type (DifferenceMeasure) – no description available

• short_name (str) – Shortened or fully abbreviated name of the validation test.

• study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• support_channels (str) – Way of communication used to interact with users or customers.

• comments (Comment) – reverse of ‘about’

• has_versions (ValidationTestVersion) – reverse of ‘is_version_of’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• learning_resources (LearningResource) – reverse of ‘about’

class ValidationTestVersion(name=None, alias=None, accessibility=None, comments=None, configuration=None, contributions=None, contributor_affiliations=None, copyright=None, description=None, digital_identifier=None, documentation=None, entry_point=None, format=None, full_name=None, funding=None, has_variants=None, homepage=None, how_to_cite=None, is_input_to=None, is_part_of=None, is_preceded_by=None, is_variant_of=None, is_version_of=None, keywords=None, learning_resources=None, publication_status=None, reference_data=None, related_publications=None, release_date=None, repository=None, short_name=None, support_channels=None, usage_conditions=None, version_identifier=None, version_specification=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, ValidationTestVersion

Structured information about a specific implementation of a validation test.

Parameters:

• accessibility (Accessibility) – Level to which something is accessible to the validation test version.

• configuration (Configuration, File, PropertyValueList, WebResource) – no description available

• contributions (Contribution) – no description available

• contributor_affiliations (Affiliation) – no description available

• copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.

• description (str) – Longer statement or account giving the characteristics of the validation test version.

• digital_identifier (DOI) – Digital handle to identify objects or legal persons.

• documentation (DOI, File, ISBN, WebResource) – no description available

• entry_point (str) – no description available

• format (ContentType) – Method of digitally organizing and structuring data or information.

• full_name (str) – Whole, non-abbreviated name of the validation test version.

• funding (Funding) – Money provided by a legal person for a particular purpose.

• homepage (IRI) – Main website of the validation test version.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• is_preceded_by (ValidationTestVersion) – no description available

• is_variant_of (ValidationTestVersion) – no description available

• is_version_of (ValidationTest) – no description available

• keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the validation test version.

• publication_status (PublicationStatus) – no description available

• reference_data (DOI, File, FileBundle, WebResource) – no description available

• related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy

• repository (FileRepository) – Place, room, or container where something is deposited or stored.

• short_name (str) – Shortened or fully abbreviated name of the validation test version.

• support_channels (str) – Way of communication used to interact with users or customers.

• usage_conditions (License, UsageAgreement) – no description available

• version_identifier (str) – Term or code used to identify the version of something.

• version_specification (str) – no description available

• comments (Comment) – reverse of ‘about’

• has_variants (ValidationTestVersion) – reverse of ‘is_variant_of’

• is_input_to (DataCopy, ModelValidation) – reverse of ‘inputs’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• learning_resources (LearningResource) – reverse of ‘about’

class Visualization(lookup_label=None, custom_property_sets=None, description=None, end_time=None, environment=None, informed=None, inputs=None, is_part_of=None, launch_configuration=None, outputs=None, performed_by=None, recipe=None, resource_usages=None, start_time=None, started_by=None, status=None, study_targets=None, tags=None, techniques=None, was_informed_by=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, Visualization

Structured information about a process of visualizing a computational model, a computational process, or a dataset.

Parameters:

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the visualization.

• end_time (datetime, time) – no description available

• environment (Environment, Service) – no description available

• inputs (LocalFile, File, FileBundle, SoftwareVersion) – Something or someone that is put into or participates in a process or machine.

• launch_configuration (LaunchConfiguration) – no description available

• lookup_label (str) – no description available

• outputs (LocalFile, File, FileArchive, FileBundle) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• recipe (WorkflowRecipeVersion) – no description available

• resource_usages (QuantitativeValue, QuantitativeValueRange) – no description available

• start_time (datetime, time) – no description available

• started_by (SoftwareAgent, Person) – no description available

• status (ActionStatusType) – no description available

• study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• tags (str) – no description available

• techniques (AnalysisTechnique) – Method of accomplishing a desired aim.

• was_informed_by (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – no description available

• informed (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘was_informed_by’

• is_part_of (WorkflowExecution) – reverse of ‘stages’

class Optimization(lookup_label=None, custom_property_sets=None, description=None, end_time=None, environment=None, informed=None, inputs=None, is_part_of=None, launch_configuration=None, outputs=None, performed_by=None, recipe=None, resource_usages=None, start_time=None, started_by=None, status=None, study_targets=None, tags=None, techniques=None, was_informed_by=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, Optimization

Structured information about a process of optimizing a model or a piece of code.

Parameters:

• custom_property_sets (CustomPropertySet) – no description available

• description (str) – Longer statement or account giving the characteristics of the optimization.

• end_time (datetime, time) – no description available

• environment (Environment, Service) – no description available

• inputs (LocalFile, File, FileBundle, ModelVersion, SoftwareVersion) – Something or someone that is put into or participates in a process or machine.

• launch_configuration (LaunchConfiguration) – no description available

• lookup_label (str) – no description available

• outputs (LocalFile, File, FileBundle, ModelVersion) – Something or someone that comes out of, is delivered or produced by a process or machine.

• performed_by (SoftwareAgent, Person) – no description available

• recipe (WorkflowRecipeVersion) – no description available

• resource_usages (QuantitativeValue, QuantitativeValueRange) – no description available

• start_time (datetime, time) – no description available

• started_by (SoftwareAgent, Person) – no description available

• status (ActionStatusType) – no description available

• study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.

• tags (str) – no description available

• techniques (AnalysisTechnique) – Method of accomplishing a desired aim.

• was_informed_by (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – no description available

• informed (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘was_informed_by’

• is_part_of (WorkflowExecution) – reverse of ‘stages’

class ServiceDeployment(name=None, depends_on=None, deployment_type=None, end_time=None, provides=None, service=None, start_time=None, uses=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, ServiceDeployment

<description not available>

Parameters:

• depends_on (WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – no description available

• deployment_type (DeploymentEnvironmentType) – no description available

• end_time (datetime) – no description available

• name (str) – Word or phrase that constitutes the distinctive designation of the service deployment.

• provides (DeployedInterface) – no description available

• service (Service) – no description available

• start_time (datetime) – no description available

• uses (WorkflowRecipeVersion, DatasetVersion, MetaDataModelVersion, ModelVersion, WebResource, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – no description available

class SoftwareAgent(name=None, activities=None, environment=None, software=None, started=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, SoftwareAgent

Structured information about a piece of software or web service that can perform a task autonomously.

Parameters:

• environment (Environment) – no description available

• name (str) – Word or phrase that constitutes the distinctive designation of the software agent.

• software (SoftwareVersion) – no description available

• activities (ProtocolExecution, CellPatching, ElectrodePlacement, RecordingActivity, DynamicMRIAcquisition, StaticMRIAcquisition, CranialWindowPreparation, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of ‘performed_by’

• started (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization, WorkflowExecution) – reverse of ‘started_by’

class WorkflowExecution(configuration=None, recipe=None, stages=None, started_by=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, WorkflowExecution

Structured information about an execution of a computational workflow.

Parameters:

• configuration (Configuration, File) – no description available

• recipe (WorkflowRecipeVersion) – no description available

• stages (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – no description available

• started_by (SoftwareAgent, Person) – no description available

class WorkflowRecipe(name=None, alias=None, comments=None, contributions=None, contributor_affiliations=None, description=None, digital_identifier=None, documentation=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, keywords=None, learning_resources=None, related_publications=None, short_name=None, support_channels=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, WorkflowRecipe

Structured information about the description of a prospective workflow.

Parameters:

• contributions (Contribution) – no description available

• contributor_affiliations (Affiliation) – no description available

• description (str) – Longer statement or account giving the characteristics of the workflow recipe.

• digital_identifier (DOI) – Digital handle to identify objects or legal persons.

• documentation (DOI, File, ISBN, WebResource) – no description available

• full_name (str) – Whole, non-abbreviated name of the workflow recipe.

• homepage (IRI) – Main website of the workflow recipe.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the workflow recipe.

• related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• short_name (str) – Shortened or fully abbreviated name of the workflow recipe.

• support_channels (str) – Way of communication used to interact with users or customers.

• comments (Comment) – reverse of ‘about’

• has_versions (WorkflowRecipeVersion) – reverse of ‘is_version_of’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• learning_resources (LearningResource) – reverse of ‘about’

class WorkflowRecipeVersion(name=None, alias=None, accessibility=None, comments=None, contributions=None, contributor_affiliations=None, copyright=None, defined=None, description=None, digital_identifier=None, documentation=None, format=None, full_name=None, funding=None, has_parts=None, has_variants=None, homepage=None, how_to_cite=None, is_part_of=None, is_preceded_by=None, is_used_by=None, is_variant_of=None, is_version_of=None, keywords=None, learning_resources=None, publication_status=None, related_publications=None, release_date=None, repository=None, short_name=None, support_channels=None, usage_conditions=None, version_identifier=None, version_specification=None, id=None, data=None, space=None, release_status=None)

Bases: KGObject, WorkflowRecipeVersion

Structured information about a specific implemented version of a workflow recipe.

Parameters:

• accessibility (Accessibility) – Level to which something is accessible to the workflow recipe version.

• contributions (Contribution) – no description available

• contributor_affiliations (Affiliation) – no description available

• copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.

• description (str) – Longer statement or account giving the characteristics of the workflow recipe version.

• digital_identifier (DOI) – Digital handle to identify objects or legal persons.

• documentation (DOI, File, ISBN, WebResource) – no description available

• format (ContentType) – Method of digitally organizing and structuring data or information.

• full_name (str) – Whole, non-abbreviated name of the workflow recipe version.

• funding (Funding) – Money provided by a legal person for a particular purpose.

• has_parts (WorkflowRecipeVersion, File, FileBundle, SoftwareVersion) – no description available

• homepage (IRI) – Main website of the workflow recipe version.

• how_to_cite (str) – Preferred format for citing a particular object or legal person.

• is_preceded_by (WorkflowRecipeVersion) – no description available

• is_variant_of (WorkflowRecipeVersion) – no description available

• is_version_of (WorkflowRecipe) – no description available

• keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the workflow recipe version.

• publication_status (PublicationStatus) – no description available

• related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.

• release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy

• repository (FileRepository) – Place, room, or container where something is deposited or stored.

• short_name (str) – Shortened or fully abbreviated name of the workflow recipe version.

• support_channels (str) – Way of communication used to interact with users or customers.

• usage_conditions (License, UsageAgreement) – no description available

• version_identifier (str) – Term or code used to identify the version of something.

• version_specification (str) – no description available

• comments (Comment) – reverse of ‘about’

• defined (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization, WorkflowExecution) – reverse of ‘recipe’

• has_variants (WorkflowRecipeVersion) – reverse of ‘is_variant_of’

• is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’

• is_used_by (ServiceDeployment) – reverse of ‘uses’

• learning_resources (LearningResource) – reverse of ‘about’