openminds.v5.core¶
Metadata about the general origin, location and content of research products.
Actors¶
- class Person(activities=None, alternate_names=None, associated_accounts=None, authored=None, comments=None, contact_information=None, contributed_to=None, digital_identifiers=None, family_name=None, funded=None, given_name=None, is_member_of=None, is_provider_of=None, manufactured=None, preferred_name=None, started=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a person.
- Parameters:
alternate_names (str) – no description available
associated_accounts (AccountInformation) – no description available
contact_information (ContactInformation) – Any available way used to contact a person or business (e.g., address, phone number, email address, etc.).
digital_identifiers (GenericIdentifier, ORCID) – Digital handle to identify objects or legal persons.
family_name (str) – Name borne in common by members of a family.
given_name (str) – Name given to a person, including all potential middle names, but excluding the family name.
preferred_name (str) – no description available
activities (ProtocolExecution, CellPatching, ElectrodePlacement, RecordingActivity, DynamicMRIAcquisition, StaticMRIAcquisition, CranialWindowPreparation, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of ‘performed_by’
authored (UsageAgreement) – reverse of ‘authoring_parties’
comments (Comment) – reverse of ‘commenter’
contributed_to (HardwareProduct, Electrode, ElectrodeArray, Pipette, MRICoil, MRIScanner, SlicingDevice) – reverse of ‘contributions’
funded (Funding) – reverse of ‘funder’
is_member_of (Membership) – reverse of ‘member’
is_provider_of (ProductSource) – reverse of ‘provider’
manufactured (Setup) – reverse of ‘manufacturers’
started (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization, WorkflowExecution) – reverse of ‘started_by’
- class ContactInformation(emails=None, is_contact_information_of=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about how to contact a given person or consortium.
- Parameters:
emails (str) – Address to which or from which an electronic mail can be sent.
is_contact_information_of (Consortium, Person) – reverse of ‘contact_information’
- class AccountInformation(belongs_to=None, service=None, user_name=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about a user account for a web service.
- class Organization(name=None, acronym=None, alternate_names=None, authored=None, contributed_to=None, country_of_formation=None, digital_identifiers=None, emitted=None, funded=None, has_children=None, has_parents=None, homepage=None, hosts=None, is_member_of=None, is_provider_of=None, jurisdiction=None, location=None, manufactured=None, memberships=None, type=None, id=None, data=None, space=None, release_status=None)[source]¶
An entity comprised of one or more natural persons with a particular purpose. [adapted from Wikipedia](https://en.wikipedia.org/wiki/Organization)
- Parameters:
acronym (str) – no description available
alternate_names (str) – no description available
country_of_formation (SovereignState) – no description available
digital_identifiers (GenericIdentifier, ISNI, LEI, RORID, RRID) – Digital handle to identify objects or legal persons.
has_parents (Organization) – Reference to a parent object or legal person.
homepage (IRI) – Main website of the organization.
jurisdiction (SovereignState, SupranationalBody) – no description available
location (Location) – no description available
memberships (Membership) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the organization.
type (OrganizationType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
authored (UsageAgreement) – reverse of ‘authoring_parties’
contributed_to (HardwareProduct, Electrode, ElectrodeArray, Pipette, MRICoil, MRIScanner, SlicingDevice) – reverse of ‘contributions’
emitted (GenericIdentifier) – reverse of ‘emitter’
funded (Funding) – reverse of ‘funder’
has_children (Organization) – reverse of ‘has_parents’
hosts (FileRepository, LivePaperResourceItem) – reverse of ‘hosted_by’
is_member_of (Membership) – reverse of ‘member’
is_provider_of (ProductSource) – reverse of ‘provider’
manufactured (Setup) – reverse of ‘manufacturers’
- class Consortium(name=None, alias=None, contact_information=None, full_name=None, homepage=None, is_member_of=None, memberships=None, short_name=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about an association of two or more persons or organizations, with the objective of participating in a common activity.
- Parameters:
contact_information (ContactInformation) – Any available way used to contact a person or business (e.g., address, phone number, email address, etc.).
full_name (str) – Whole, non-abbreviated name of the consortium.
homepage (IRI) – Main website of the consortium.
memberships (Membership) – no description available
short_name (str) – Shortened or fully abbreviated name of the consortium.
is_member_of (Membership) – reverse of ‘member’
- class Affiliation(organizations=None, person=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about a relationship between two entities, such as a person and their employer.
- Parameters:
organizations (Organization) – Legally accountable, administrative and functional structure.
person (Person) – no description available
- class Contribution(contributors=None, type=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on the contribution made to a research product.
- Parameters:
contributors (Consortium, Organization, Person) – Legal person that gave or supplied something as a part or share.
type (ContributionType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
Data¶
- class Channel(internal_identifier=None, unit=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
internal_identifier (str) – Term or code that identifies the channel within a particular product.
unit (UnitOfMeasurement) – Determinate quantity adopted as a standard of measurement.
- class ContentType(name=None, data_types=None, defining_sources=None, description=None, display_label=None, file_extensions=None, has_derived=None, is_based_on=None, is_defined_by=None, is_format_of=None, is_output_format_of=None, is_specification_format_of=None, specification=None, synonyms=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on the content type of a file instance, bundle or repository.
- Parameters:
data_types (DataType) – no description available
defining_sources (str) – no description available
description (str) – Longer statement or account giving the characteristics of the content type.
display_label (str) – no description available
file_extensions (str) – String of characters attached as suffix to the names of files of a particular format.
is_based_on (ContentType) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the content type.
specification (IRI) – Detailed and precise presentation of, or proposal for something.
synonyms (str) – Words or expressions used in the same language that have the same or nearly the same meaning in some or all senses.
has_derived (ContentType) – reverse of ‘is_based_on’
is_defined_by (ContentTypePattern) – reverse of ‘content_type’
is_format_of (ValidationTestVersion, WorkflowRecipeVersion, Configuration, File, FileArchive, FileBundle, FileRepository, LocalFile, ModelVersion, WebResource) – reverse of ‘format’
is_output_format_of (SoftwareVersion) – reverse of ‘output_formats’
is_specification_format_of (MetaDataModelVersion) – reverse of ‘specification_formats’
- class ContentTypePattern(lookup_label=None, content_type=None, identifies_content_of=None, regex=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
content_type (ContentType) – no description available
lookup_label (str) – no description available
regex (str) – no description available
identifies_content_of (FileRepository) – reverse of ‘content_type_patterns’
- class Copyright(custom_usage_clause=None, holders=None, years=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on the copyright.
- Parameters:
custom_usage_clause (str) – no description available
holders (Organization, Person) – Legal person in possession of something.
years (str) – Cycle in the Gregorian calendar specified by a number and comprised of 365 or 366 days divided into 12 months beginning with January and ending with December.
- class File(name=None, content_description=None, data_types=None, describes=None, documents=None, file_repository=None, format=None, has_copies=None, hash=None, hashes=None, iri=None, is_also_part_of=None, is_configuration_of=None, is_default_image_for=None, is_input_to=None, is_location_of=None, is_output_of=None, is_part_of=None, is_preview_of=None, is_reference_for=None, is_source_data_of=None, is_used_to_group=None, special_usage_role=None, specifies=None, storage_size=None, used_in=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a file instance that is accessible via a URL.
- Parameters:
content_description (str) – no description available
data_types (DataType) – no description available
file_repository (FileRepository) – no description available
format (ContentType) – Method of digitally organizing and structuring data or information.
hashes (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.
iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.
is_part_of (FileBundle) – Reference to the ensemble of multiple things or beings.
name (str) – Word or phrase that constitutes the distinctive designation of the file.
special_usage_role (FileUsageRole) – Particular function of something when it is used.
storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.
describes (BehavioralProtocol, Protocol, ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – reverse of described_in, metadata_locations
documents (ValidationTest, WorkflowRecipe, Dataset, Interface, MetaDataModel, MetaDataModelVersion, Model, Service, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – reverse of ‘documentation’
has_copies (LocalFile) – reverse of ‘copy_of’
is_also_part_of (WorkflowRecipeVersion) – reverse of ‘has_parts’
is_configuration_of (WorkflowExecution) – reverse of ‘configuration’
is_default_image_for (CustomCoordinateFramework) – reverse of ‘default_images’
is_input_to (DatasetVersion) – reverse of ‘input_data’
is_location_of (GridImage, GridImageSequence, GridImageStack, GridVolume, GridVolumeSequence, RegularTimeSeries) – reverse of ‘data_location’
is_output_of (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization, ModelVersion, ProtocolExecution, RecordingActivity, StimulationActivity) – reverse of output_data, outputs
is_preview_of (ServiceLink) – reverse of ‘preview_image’
is_reference_for (ValidationTestVersion) – reverse of ‘reference_data’
is_source_data_of (FileArchive) – reverse of ‘source_data’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
specifies (InterfaceVersion, AtlasAnnotation, CustomAnnotation, EphysStimulus) – reverse of ‘specification’
used_in (DynamicMRIAcquisition, StaticMRIAcquisition) – reverse of ‘registration_data’
- class FileBundle(name=None, content_description=None, describes=None, format=None, grouped_by=None, grouping_types=None, has_parts=None, hash=None, is_also_part_of=None, is_input_to=None, is_location_of=None, is_output_of=None, is_part_of=None, is_reference_for=None, specifies=None, storage_size=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a bundle of file instances.
- Parameters:
content_description (str) – no description available
format (ContentType) – Method of digitally organizing and structuring data or information.
grouped_by (AnalysisTechnique, AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MRIPulseSequence, MRIWeighting, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, TactileStimulusType, Technique, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, BehavioralProtocol, File, FileBundle, LocalFile, Subject, SubjectGroup, SubjectGroupState, SubjectState, TissueSample, TissueSampleCollection, TissueSampleCollectionState, TissueSampleState, CommonCoordinateFramework, CommonCoordinateFrameworkVersion, CustomAnatomicalEntity, CustomCoordinateFramework, ParcellationEntity, ParcellationEntityVersion) – Reference to the aspect used to group something.
grouping_types (FileBundleGrouping) – no description available
hash (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.
is_part_of (FileBundle, FileRepository) – Reference to the ensemble of multiple things or beings.
name (str) – Word or phrase that constitutes the distinctive designation of the file bundle.
storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.
describes (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – reverse of ‘metadata_locations’
has_parts (File, FileBundle) – reverse of ‘is_part_of’
is_also_part_of (WorkflowRecipeVersion) – reverse of ‘has_parts’
is_input_to (DatasetVersion) – reverse of ‘input_data’
is_location_of (GridImage, GridImageSequence, GridImageStack, GridVolume, GridVolumeSequence, RegularTimeSeries, ServiceLink) – reverse of ‘data_location’
is_output_of (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization, ModelVersion, ProtocolExecution, RecordingActivity, StimulationActivity) – reverse of output_data, outputs
is_reference_for (ValidationTestVersion) – reverse of ‘reference_data’
specifies (EphysStimulus) – reverse of ‘specifications’
- class FileRepository(name=None, contains_content_of=None, content_type_patterns=None, files=None, format=None, has_parts=None, hash=None, hosted_by=None, iri=None, storage_size=None, structure_pattern=None, type=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a file repository.
- Parameters:
content_type_patterns (ContentTypePattern) – no description available
format (ContentType) – Method of digitally organizing and structuring data or information.
hash (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.
hosted_by (Organization) – Reference to an organization that provides facilities and services for something.
iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.
name (str) – Word or phrase that constitutes the distinctive designation of the file repository.
storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.
structure_pattern (FileRepositoryStructure) – no description available
type (FileRepositoryType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
contains_content_of (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, InterfaceVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, LivePaperVersion, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘repository’
files (File) – reverse of ‘file_repository’
has_parts (FileBundle) – reverse of ‘is_part_of’
- class FileArchive(format=None, iri=None, is_location_of=None, is_output_of=None, source_data=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
format (ContentType) – Method of digitally organizing and structuring data or information.
iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.
source_data (File) – no description available
is_location_of (ServiceLink) – reverse of ‘data_location’
is_output_of (DataAnalysis, GenericComputation, Simulation, Visualization) – reverse of ‘outputs’
- class FilePathPattern(grouping_types=None, regex=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
grouping_types (FileBundleGrouping) – no description available
regex (str) – no description available
- class FileRepositoryStructure(lookup_label=None, file_path_patterns=None, structures=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
file_path_patterns (FilePathPattern) – no description available
lookup_label (str) – no description available
structures (FileRepository) – reverse of ‘structure_pattern’
- class GridImage(name=None, additional_remarks=None, coordinate_framework=None, data_location=None, dimensions=None, obtained_with=None, pixel_sizes=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
coordinate_framework (CommonCoordinateFrameworkVersion, CustomCoordinateFramework) – no description available
data_location (File, FileBundle) – no description available
dimensions (int) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the grid image.
obtained_with (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – no description available
pixel_sizes (QuantitativeValue) – no description available
- class GridImageSequence(name=None, additional_remarks=None, coordinate_framework=None, data_location=None, dimensions=None, number_of_images=None, obtained_with=None, pixel_sizes=None, temporal_sampling_frequency=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
coordinate_framework (CommonCoordinateFrameworkVersion, CustomCoordinateFramework) – no description available
data_location (File, FileBundle) – no description available
dimensions (int) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the grid image sequence.
number_of_images (int) – no description available
obtained_with (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – no description available
pixel_sizes (QuantitativeValue) – no description available
temporal_sampling_frequency (QuantitativeValue) – no description available
- class GridImageStack(name=None, additional_remarks=None, coordinate_framework=None, data_location=None, dimensions=None, number_of_images=None, obtained_with=None, pixel_sizes=None, z_step_size=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
coordinate_framework (CommonCoordinateFrameworkVersion, CustomCoordinateFramework) – no description available
data_location (File, FileBundle) – no description available
dimensions (int) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the grid image stack.
number_of_images (int) – no description available
obtained_with (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – no description available
pixel_sizes (QuantitativeValue) – no description available
z_step_size (QuantitativeValue) – no description available
- class GridVolume(name=None, additional_remarks=None, coordinate_framework=None, data_location=None, dimensions=None, number_of_planes=None, obtained_with=None, voxel_sizes=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
coordinate_framework (CommonCoordinateFrameworkVersion, CustomCoordinateFramework) – no description available
data_location (File, FileBundle) – no description available
dimensions (int) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the grid volume.
number_of_planes (int) – no description available
obtained_with (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – no description available
voxel_sizes (QuantitativeValue) – Extent of the discrete elements comprising a three-dimensional entity.
- class GridVolumeSequence(name=None, additional_remarks=None, coordinate_framework=None, data_location=None, dimensions=None, number_of_planes=None, number_of_volumes=None, obtained_with=None, temporal_sampling_frequency=None, voxel_sizes=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
coordinate_framework (CommonCoordinateFrameworkVersion, CustomCoordinateFramework) – no description available
data_location (File, FileBundle) – no description available
dimensions (int) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the grid volume sequence.
number_of_planes (int) – no description available
number_of_volumes (int) – no description available
obtained_with (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – no description available
temporal_sampling_frequency (QuantitativeValue) – no description available
voxel_sizes (QuantitativeValue) – Extent of the discrete elements comprising a three-dimensional entity.
- class Hash(algorithm=None, digest=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a hash.
- Parameters:
algorithm (str) – Procedure for solving a mathematical problem in a finite number of steps. Can involve repetition of an operation.
digest (str) – Summation or condensation of a body of information.
- class License(name=None, alias=None, applies_to=None, full_name=None, is_source_of=None, legal_code=None, short_name=None, webpages=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a used license.
- Parameters:
full_name (str) – Whole, non-abbreviated name of the license.
legal_code (IRI) – Type of legislation that claims to cover the law system (complete or parts) as it existed at the time the code was enacted.
short_name (str) – Shortened or fully abbreviated name of the license.
webpages (str) – Hypertext document (block of information) found on the World Wide Web.
applies_to (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, HardwareProduct, InterfaceVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, Book, Chapter, LearningResource, LivePaperVersion, ScholarlyArticle, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘usage_conditions’
is_source_of (UsageAgreement) – reverse of ‘sources’
- class LocalFile(name=None, content_description=None, copy_of=None, data_types=None, format=None, hash=None, is_output_of=None, is_used_to_group=None, path=None, special_usage_role=None, storage_size=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about a file that is not accessible via a URL.
- Parameters:
content_description (str) – no description available
copy_of (File) – no description available
data_types (DataType) – no description available
format (ContentType) – Method of digitally organizing and structuring data or information.
hash (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.
name (str) – Word or phrase that constitutes the distinctive designation of the local file.
path (str) – no description available
special_usage_role (FileUsageRole) – Particular function of something when it is used.
storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.
is_output_of (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘outputs’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
- class RegularTimeSeries(name=None, additional_remarks=None, channels=None, data_location=None, internal_identifier=None, next_regular_time_series=None, obtained_with=None, previous_regular_time_series=None, sampling_frequency=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
channels (Channel) – no description available
data_location (File, FileBundle) – no description available
internal_identifier (str) – Term or code that identifies the regular time series within a particular product.
name (str) – Word or phrase that constitutes the distinctive designation of the regular time series.
obtained_with (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – no description available
previous_regular_time_series (RegularTimeSeries) – no description available
sampling_frequency (QuantitativeValue) – no description available
next_regular_time_series (RegularTimeSeries) – reverse of ‘previous_regular_time_series’
- class ServiceLink(data_location=None, display_label=None, open_data_in=None, preview_image=None, services=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
data_location (File, FileArchive, FileBundle, ModelVersion, LivePaperResourceItem, ParcellationEntityVersion) – no description available
display_label (str) – no description available
open_data_in (IRI) – no description available
preview_image (File) – no description available
services (Interface, InterfaceVersion, WebResource) – no description available
- class UsageAgreement(name=None, alias=None, applies_to=None, authoring_parties=None, full_name=None, is_source_of=None, jurisdiction=None, modification_profiles=None, short_name=None, sources=None, support_channels=None, template=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
authoring_parties (Organization, Person) – no description available
full_name (str) – Whole, non-abbreviated name of the usage agreement.
jurisdiction (SovereignState, SupranationalBody) – no description available
modification_profiles (ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope) – no description available
short_name (str) – Shortened or fully abbreviated name of the usage agreement.
sources (License, UsageAgreement) – no description available
support_channels (str) – Way of communication used to interact with users or customers.
template (WebResource) – no description available
applies_to (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, HardwareProduct, InterfaceVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, Book, Chapter, LearningResource, LivePaperVersion, ScholarlyArticle, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘usage_conditions’
is_source_of (UsageAgreement) – reverse of ‘sources’
- class Measurement(additional_remarks=None, measured_quantity=None, obtained_with=None, timestamp=None, values=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about a measurement performed during a scientific experiment.
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
measured_quantity (MeasuredQuantity) – no description available
obtained_with (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – no description available
timestamp (datetime) – no description available
values (QuantitativeValue, QuantitativeValueRange) – Entry for a property.
- class QuantitativeValue(type_of_uncertainty=None, uncertainties=None, unit=None, value=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a quantitative value.
- Parameters:
type_of_uncertainty (TypeOfUncertainty) – Distinct technique used to quantify the uncertainty of a measurement.
uncertainties (Real) – Quantitative value range defining the uncertainty of a measurement.
unit (UnitOfMeasurement) – Determinate quantity adopted as a standard of measurement.
value (Real) – Entry for a property.
- class QuantitativeValueArray(negative_uncertainties=None, positive_uncertainties=None, type_of_uncertainty=None, unit=None, values=None, id=None, data=None, space=None, release_status=None)[source]¶
A representation of an array of quantitative values, optionally with uncertainties.
- Parameters:
negative_uncertainties (Real) – no description available
positive_uncertainties (Real) – no description available
type_of_uncertainty (TypeOfUncertainty) – Distinct technique used to quantify the uncertainty of a measurement.
unit (UnitOfMeasurement) – Determinate quantity adopted as a standard of measurement.
values (Real) – no description available
- class QuantitativeValueRange(max_value=None, max_value_unit=None, min_value=None, min_value_unit=None, id=None, data=None, space=None, release_status=None)[source]¶
A representation of a range of quantitative values.
- Parameters:
max_value (Real) – Greatest quantity attained or allowed.
max_value_unit (UnitOfMeasurement) – no description available
min_value (Real) – Smallest quantity attained or allowed.
min_value_unit (UnitOfMeasurement) – no description available
Miscellaneous¶
- class Accessibility(application=None, channel=None, eligibility=None, form=None, is_accessibility_of=None, payment_models=None, process=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
application (str) – no description available
channel (AccessChannel) – no description available
eligibility (AccessEligibilityType) – no description available
form (AccessForm) – no description available
payment_models (PaymentModelType) – no description available
process (AccessProcessType) – no description available
is_accessibility_of (DeployedInterface, ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, InterfaceVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, LivePaperVersion, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘accessibility’
- class Comment(about=None, comment=None, commenter=None, timestamp=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about a short text expressing an opinion on, or giving information about some entity.
- Parameters:
about (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, Interface, InterfaceVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – no description available
comment (str) – no description available
commenter (Person) – no description available
timestamp (datetime) – no description available
- class Dependency(failure_impacts=None, fulfilled_by=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
failure_impacts (DependencyImpact) – no description available
fulfilled_by (Configuration, File, InterfaceVersion, SoftwareVersion, WebResource) – no description available
- class Funding(acknowledgement=None, award_number=None, award_title=None, funded=None, funder=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on used funding.
- Parameters:
acknowledgement (str) – Official declaration or avowal of appreciation of an act or achievement.
award_number (str) – Machine-readable identifier for a benefit that is conferred or bestowed on the basis of merit or need.
award_title (str) – Human-readable identifier for a benefit that is conferred or bestowed on the basis of merit or need.
funder (Organization, Person) – Legal person that provides money for a particular purpose.
funded (ValidationTestVersion, WorkflowRecipeVersion, DatasetVersion, InterfaceVersion, MetaDataModelVersion, ModelVersion, SoftwareVersion, Book, Chapter, LearningResource, LivePaperVersion, ScholarlyArticle, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘funding’
- class GeoCoordinates(elevation=None, latitude=None, longitude=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
elevation (Real) – no description available
latitude (Real) – no description available
longitude (Real) – no description available
- class Location(address=None, country=None, geo_coordinates=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
address (str) – no description available
country (SovereignState) – no description available
geo_coordinates (GeoCoordinates) – no description available
- class Membership(end_date=None, member=None, start_date=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
end_date (date) – Date in the Gregorian calendar at which something terminates in time.
member (Consortium, Organization, Person) – no description available
start_date (date) – Date in the Gregorian calendar at which something begins in time
- class ResearchProductGroup(context=None, has_parts=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
context (str) – no description available
has_parts (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, Interface, InterfaceVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – no description available
- class WebResource(content_description=None, describes=None, documents=None, format=None, iri=None, is_entry_point_of=None, is_input_to=None, is_output_of=None, is_reference_for=None, is_template_of=None, is_used_by=None, linked_from=None, specifies=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
content_description (str) – no description available
format (ContentType) – Method of digitally organizing and structuring data or information.
iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.
describes (BehavioralProtocol, Protocol) – reverse of ‘described_in’
documents (ValidationTest, WorkflowRecipe, WorkflowRecipeVersion, Dataset, Interface, MetaDataModel, MetaDataModelVersion, Model, Service, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – reverse of ‘documentation’
is_entry_point_of (DeployedInterface) – reverse of ‘entry_point’
is_input_to (DatasetVersion) – reverse of ‘input_data’
is_output_of (ModelVersion) – reverse of ‘output_data’
is_reference_for (ValidationTestVersion) – reverse of ‘reference_data’
is_template_of (UsageAgreement) – reverse of ‘template’
is_used_by (ServiceDeployment) – reverse of ‘uses’
linked_from (ServiceLink) – reverse of ‘services’
specifies (InterfaceVersion) – reverse of ‘specification’
Identifiers¶
- class DOI(describes=None, identifier=None, identifies=None, related_to=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about a digital object identifier, as standardized by the International Organization for Standardization.
- Parameters:
identifier (str) – Term or code used to identify the DOI.
describes (BehavioralProtocol, Protocol) – reverse of ‘described_in’
identifies (HardwareProduct, Book, Chapter, LearningResource, ScholarlyArticle) – reverse of ‘digital_identifier’
related_to (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, Interface, InterfaceVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Service, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – reverse of ‘related_publications’
- class GenericIdentifier(emitter=None, identifier=None, identifies=None, related_to=None, type=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
emitter (Organization) – no description available
identifier (str) – Term or code used to identify the generic identifier.
type (str) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
identifies (HardwareProduct, Organization, Person) – reverse of ‘digital_identifier’
related_to (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, Interface, InterfaceVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Service, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – reverse of ‘related_publications’
- class HANDLE(identifier=None, related_to=None, id=None, data=None, space=None, release_status=None)[source]¶
A persistent identifier for an information resource provided by the Handle System of the Corporation for National Research Initiatives.
- Parameters:
identifier (str) – Term or code used to identify the HANDLE.
related_to (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, Interface, InterfaceVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Service, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – reverse of ‘related_publications’
- class IdentifiersDotOrgID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
identifier (str) – Term or code used to identify the identifiers dot org i d.
identifies (Dataset, DatasetVersion) – reverse of ‘digital_identifier’
- class ISBN(cited_in=None, identifier=None, identifies=None, related_to=None, id=None, data=None, space=None, release_status=None)[source]¶
An International Standard Book Number of the International ISBN Agency.
- Parameters:
identifier (str) – Term or code used to identify the ISBN.
cited_in (Chapter, LearningResource, ScholarlyArticle) – reverse of ‘cited_publications’
identifies (Book) – reverse of ‘digital_identifier’
related_to (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, Interface, InterfaceVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Service, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – reverse of ‘related_publications’
- class ISNI(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
identifier (str) – Term or code used to identify the ISNI.
identifies (Organization) – reverse of ‘digital_identifiers’
- class ISSN(identifier=None, identifies=None, related_to=None, id=None, data=None, space=None, release_status=None)[source]¶
An International Standard Serial Number of the ISSN International Centre.
- Parameters:
identifier (str) – Term or code used to identify the ISSN.
identifies (Periodical) – reverse of ‘digital_identifier’
related_to (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, Interface, InterfaceVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Service, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – reverse of ‘related_publications’
- class LEI(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
identifier (str) – Term or code used to identify the LEI.
identifies (Organization) – reverse of ‘digital_identifiers’
- class ORCID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)[source]¶
A persistent identifier for a researcher provided by Open Researcher and Contributor ID, Inc.
- Parameters:
identifier (str) – Term or code used to identify the ORCID.
identifies (Person) – reverse of ‘digital_identifiers’
- class RORID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)[source]¶
A persistent identifier for a research organization, provided by the Research Organization Registry.
- Parameters:
identifier (str) – Term or code used to identify the RORID.
identifies (Organization) – reverse of ‘digital_identifiers’
- class RRID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)[source]¶
A persistent identifier for a research resource provided by the Resource Identification Initiative.
- Parameters:
identifier (str) – Term or code used to identify the RRID.
identifies (ProductSource, Dataset, DatasetVersion, HardwareProduct, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Organization, Software, SoftwareVersion, Strain, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – reverse of ‘digital_identifier’
- class SWHID(identifier=None, identifies=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
identifier (str) – Term or code used to identify the SWHID.
identifies (MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion) – reverse of ‘digital_identifier’
- class StockNumber(identifier=None, vendor=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
identifier (str) – Term or code used to identify the stock number.
vendor (Organization) – no description available
Products¶
- class Dataset(name=None, alias=None, comments=None, contributions=None, contributor_affiliations=None, description=None, digital_identifier=None, documentation=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, keywords=None, learning_resources=None, related_publications=None, short_name=None, support_channels=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on data originating from human/animal studies or simulations (concept level).
- Parameters:
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
description (str) – Longer statement or account giving the characteristics of the dataset.
digital_identifier (DOI, GenericIdentifier, IdentifiersDotOrgID, RRID) – Digital handle to identify objects or legal persons.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the dataset.
homepage (IRI) – Main website of the dataset.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the dataset.
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
short_name (str) – Shortened or fully abbreviated name of the dataset.
support_channels (str) – Way of communication used to interact with users or customers.
comments (Comment) – reverse of ‘about’
has_versions (DatasetVersion) – reverse of ‘is_version_of’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
learning_resources (LearningResource) – reverse of ‘about’
- class DatasetVersion(name=None, alias=None, accessibility=None, comments=None, contributions=None, contributor_affiliations=None, copyright=None, data_types=None, description=None, digital_identifier=None, documentation=None, ethics_jurisdiction=None, experimental_approaches=None, full_name=None, funding=None, has_parts=None, has_variants=None, homepage=None, how_to_cite=None, input_data=None, is_input_to=None, is_part_of=None, is_preceded_by=None, is_used_by=None, is_variant_of=None, is_version_of=None, keywords=None, learning_resources=None, preparation_types=None, protocols=None, publication=None, publication_status=None, related_publications=None, release_date=None, repository=None, short_name=None, studied_specimens=None, study_targets=None, support_channels=None, techniques=None, usage_conditions=None, version_identifier=None, version_specification=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on data originating from human/animal studies or simulations (version level).
- Parameters:
accessibility (Accessibility) – Level to which something is accessible to the dataset version.
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
data_types (SemanticDataType) – no description available
description (str) – Longer statement or account giving the characteristics of the dataset version.
digital_identifier (DOI, GenericIdentifier, IdentifiersDotOrgID, RRID) – Digital handle to identify objects or legal persons.
documentation (DOI, File, ISBN, WebResource) – no description available
ethics_jurisdiction (SovereignState, SupranationalBody) – no description available
experimental_approaches (ExperimentalApproach) – no description available
full_name (str) – Whole, non-abbreviated name of the dataset version.
funding (Funding) – Money provided by a legal person for a particular purpose.
homepage (IRI) – Main website of the dataset version.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
input_data (DOI, File, FileBundle, WebResource, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – Data that is put into a process or machine.
is_preceded_by (DatasetVersion) – no description available
is_variant_of (DatasetVersion) – no description available
is_version_of (Dataset) – no description available
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the dataset version.
preparation_types (PreparationType) – Distinct class of actions or processes that make something ready for use or service.
protocols (BehavioralProtocol, Protocol) – Plan that describes the process of a scientific or medical experiment, treatment, or procedure.
publication_status (PublicationStatus) – no description available
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
repository (FileRepository) – Place, room, or container where something is deposited or stored.
short_name (str) – Shortened or fully abbreviated name of the dataset version.
studied_specimens (Subject, SubjectState, SubjectGroup, SubjectGroupState, TissueSample, TissueSampleState, TissueSampleCollection, TissueSampleCollectionState) – no description available
study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.
support_channels (str) – Way of communication used to interact with users or customers.
techniques (AnalysisTechnique, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, SpatialEncoding, StimulationApproach, StimulationTechnique, Technique) – Method of accomplishing a desired aim.
usage_conditions (License, UsageAgreement) – no description available
version_identifier (str) – Term or code used to identify the version of something.
version_specification (str) – no description available
comments (Comment) – reverse of ‘about’
has_parts (ProtocolExecution, CellPatching, ElectrodePlacement, RecordingActivity, DynamicMRIAcquisition, StaticMRIAcquisition, CranialWindowPreparation, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of ‘is_part_of’
has_variants (DatasetVersion) – reverse of ‘is_variant_of’
is_input_to (DataCopy) – reverse of ‘inputs’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
is_used_by (ServiceDeployment) – reverse of ‘uses’
learning_resources (LearningResource) – reverse of ‘about’
publication (LivePaperVersion) – reverse of ‘about’
- class HardwareProduct(name=None, contributions=None, copyright=None, description=None, digital_identifier=None, is_type_of=None, keywords=None, scopes=None, specification=None, type=None, usage_conditions=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
contributions (Organization, Person) – no description available
copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
description (str) – Longer statement or account giving the characteristics of the hardware product.
digital_identifier (DOI, GenericIdentifier, RRID) – Digital handle to identify objects or legal persons.
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the hardware product.
name (str) – Word or phrase that constitutes the distinctive designation of the hardware product.
scopes (AnalysisTechnique, ContributionType, DataType, ExperimentalApproach, OperationalApproach, SoftwareApplicationCategory, SoftwareFeature, Technique, TermSuggestion) – Extent of something.
specification (PropertyValueList) – Detailed and precise presentation of, or proposal for something.
type (DeviceType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
usage_conditions (License, UsageAgreement) – no description available
is_type_of (Electrode, ElectrodeArray, Pipette, MRICoil, MRIScanner, SlicingDevice) – reverse of ‘type’
- class Interface(name=None, alias=None, comments=None, communication_protocol=None, contributions=None, contributor_affiliations=None, description=None, documentation=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, interface_type=None, is_part_of=None, keywords=None, learning_resources=None, linked_from=None, related_publications=None, short_name=None, support_channels=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
communication_protocol (CommunicationProtocol) – no description available
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
description (str) – Longer statement or account giving the characteristics of the interface.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the interface.
homepage (IRI) – Main website of the interface.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
interface_type (CommunicationInterfaceType) – no description available
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the interface.
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
short_name (str) – Shortened or fully abbreviated name of the interface.
support_channels (str) – Way of communication used to interact with users or customers.
comments (Comment) – reverse of ‘about’
has_versions (InterfaceVersion) – reverse of ‘is_version_of’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
learning_resources (LearningResource) – reverse of ‘about’
linked_from (ServiceLink) – reverse of ‘services’
- class InterfaceVersion(name=None, alias=None, accessibility=None, comments=None, contributions=None, contributor_affiliations=None, copyright=None, description=None, documentation=None, full_name=None, funding=None, has_variants=None, homepage=None, how_to_cite=None, is_implemented_by=None, is_interface_of=None, is_part_of=None, is_preceded_by=None, is_variant_of=None, is_version_of=None, keywords=None, learning_resources=None, linked_from=None, publication_status=None, related_publications=None, release_date=None, repository=None, short_name=None, specification=None, support_channels=None, usage_conditions=None, version_identifier=None, version_specification=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
accessibility (Accessibility) – Level to which something is accessible to the interface version.
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
description (str) – Longer statement or account giving the characteristics of the interface version.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the interface version.
funding (Funding) – Money provided by a legal person for a particular purpose.
homepage (IRI) – Main website of the interface version.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
is_preceded_by (InterfaceVersion) – no description available
is_variant_of (InterfaceVersion) – no description available
is_version_of (Interface) – no description available
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the interface version.
publication_status (PublicationStatus) – no description available
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
repository (FileRepository) – Place, room, or container where something is deposited or stored.
short_name (str) – Shortened or fully abbreviated name of the interface version.
specification (File, WebResource) – Detailed and precise presentation of, or proposal for something.
support_channels (str) – Way of communication used to interact with users or customers.
usage_conditions (License, UsageAgreement) – no description available
version_identifier (str) – Term or code used to identify the version of something.
version_specification (str) – no description available
comments (Comment) – reverse of ‘about’
has_variants (InterfaceVersion) – reverse of ‘is_variant_of’
is_implemented_by (SoftwareVersion) – reverse of ‘implements’
is_interface_of (DeployedInterface) – reverse of ‘interface’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
learning_resources (LearningResource) – reverse of ‘about’
linked_from (ServiceLink) – reverse of ‘services’
- class Model(name=None, alias=None, abstraction_level=None, comments=None, contributions=None, contributor_affiliations=None, description=None, digital_identifier=None, documentation=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, keywords=None, learning_resources=None, model_scope=None, related_publications=None, scope=None, short_name=None, study_targets=None, support_channels=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a computational model (concept level).
- Parameters:
abstraction_level (ModelAbstractionLevel) – Extent of simplification of physical, spatial, or temporal details or attributes in the study of objects or systems.
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
description (str) – Longer statement or account giving the characteristics of the model.
digital_identifier (DOI, GenericIdentifier, RRID, SWHID) – Digital handle to identify objects or legal persons.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the model.
homepage (IRI) – Main website of the model.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the model.
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
scope (ModelScope) – Extent of something.
short_name (str) – Shortened or fully abbreviated name of the model.
study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.
support_channels (str) – Way of communication used to interact with users or customers.
comments (Comment) – reverse of ‘about’
has_versions (ModelVersion) – reverse of ‘is_version_of’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
learning_resources (LearningResource) – reverse of ‘about’
- class ModelVersion(name=None, alias=None, accessibility=None, comments=None, configuration=None, contributions=None, contributor_affiliations=None, copyright=None, description=None, digital_identifier=None, documentation=None, entry_point=None, formats=None, full_name=None, funding=None, has_variants=None, homepage=None, how_to_cite=None, input_data=None, is_input_to=None, is_location_of=None, is_output_of=None, is_part_of=None, is_preceded_by=None, is_used_by=None, is_variant_of=None, is_version_of=None, keywords=None, learning_resources=None, output_data=None, publication=None, publication_status=None, related_publications=None, release_date=None, repository=None, short_name=None, support_channels=None, usage_conditions=None, version_identifier=None, version_specification=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a computational model (version level).
- Parameters:
accessibility (Accessibility) – Level to which something is accessible to the model version.
configuration (Configuration, File, PropertyValueList, WebResource) – no description available
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
description (str) – Longer statement or account giving the characteristics of the model version.
digital_identifier (DOI, GenericIdentifier, RRID, SWHID) – Digital handle to identify objects or legal persons.
documentation (DOI, File, ISBN, WebResource) – no description available
entry_point (str) – no description available
formats (ContentType) – Method of digitally organizing and structuring data or information.
full_name (str) – Whole, non-abbreviated name of the model version.
funding (Funding) – Money provided by a legal person for a particular purpose.
homepage (IRI) – Main website of the model version.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
input_data (DOI, File, FileBundle, WebResource) – Data that is put into a process or machine.
is_preceded_by (ModelVersion) – no description available
is_variant_of (ModelVersion) – no description available
is_version_of (Model) – no description available
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the model version.
output_data (DOI, File, FileBundle, WebResource) – Data that comes out of, is delivered or produced by a process or machine.
publication_status (PublicationStatus) – no description available
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
repository (FileRepository) – Place, room, or container where something is deposited or stored.
short_name (str) – Shortened or fully abbreviated name of the model version.
support_channels (str) – Way of communication used to interact with users or customers.
usage_conditions (License, UsageAgreement) – no description available
version_identifier (str) – Term or code used to identify the version of something.
version_specification (str) – no description available
comments (Comment) – reverse of ‘about’
has_variants (ModelVersion) – reverse of ‘is_variant_of’
is_input_to (DataCopy, ModelValidation, Simulation) – reverse of ‘inputs’
is_location_of (ServiceLink) – reverse of ‘data_location’
is_output_of (Optimization) – reverse of ‘outputs’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
is_used_by (ServiceDeployment) – reverse of ‘uses’
learning_resources (LearningResource) – reverse of ‘about’
publication (LivePaperVersion) – reverse of ‘about’
- class Project(name=None, alias=None, contributions=None, description=None, full_name=None, has_parts=None, homepage=None, short_name=None, type=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a research project.
- Parameters:
contributions (Contribution) – no description available
description (str) – Longer statement or account giving the characteristics of the project.
full_name (str) – Whole, non-abbreviated name of the project.
has_parts (ValidationTest, ValidationTestVersion, WorkflowRecipe, WorkflowRecipeVersion, Dataset, DatasetVersion, Interface, InterfaceVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion, LivePaper, LivePaperVersion, AnatomicalAtlas, AnatomicalAtlasVersion, CommonCoordinateFramework, CommonCoordinateFrameworkVersion) – no description available
homepage (IRI) – Main website of the project.
short_name (str) – Shortened or fully abbreviated name of the project.
type (ProjectType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
- class Service(name=None, alias=None, contributions=None, deployments=None, description=None, documentation=None, full_name=None, has_accounts=None, hosts=None, how_to_cite=None, keywords=None, related_publications=None, scopes=None, short_name=None, support_channels=None, used_for=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
contributions (Contribution) – no description available
description (str) – Longer statement or account giving the characteristics of the service.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the service.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the service.
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
scopes (AnalysisTechnique, ContributionType, DataType, ExperimentalApproach, OperationalApproach, SoftwareApplicationCategory, SoftwareFeature, Technique, TermSuggestion) – Extent of something.
short_name (str) – Shortened or fully abbreviated name of the service.
support_channels (str) – Way of communication used to interact with users or customers.
deployments (ServiceDeployment) – reverse of ‘service’
has_accounts (AccountInformation) – reverse of ‘service’
hosts (LivePaperResourceItem) – reverse of ‘hosted_by’
used_for (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘environment’
- class Setup(name=None, description=None, has_parts=None, is_part_of=None, location=None, manufacturers=None, types=None, used_in=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
description (str) – Longer statement or account giving the characteristics of the setup.
has_parts (Setup, SoftwareVersion, Electrode, ElectrodeArray, Pipette, MRICoil, MRIScanner, SlicingDevice) – no description available
location (str) – no description available
manufacturers (Organization, Person) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the setup.
types (SetupType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
is_part_of (Setup) – reverse of ‘has_parts’
used_in (StimulationActivity) – reverse of ‘setup’
- class Software(name=None, alias=None, comments=None, contributions=None, contributor_affiliations=None, description=None, digital_identifier=None, documentation=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, keywords=None, learning_resources=None, related_publications=None, short_name=None, support_channels=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a software tool (concept level).
- Parameters:
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
description (str) – Longer statement or account giving the characteristics of the software.
digital_identifier (DOI, GenericIdentifier, RRID, SWHID) – Digital handle to identify objects or legal persons.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the software.
homepage (IRI) – Main website of the software.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the software.
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
short_name (str) – Shortened or fully abbreviated name of the software.
support_channels (str) – Way of communication used to interact with users or customers.
comments (Comment) – reverse of ‘about’
has_versions (SoftwareVersion) – reverse of ‘is_version_of’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
learning_resources (LearningResource) – reverse of ‘about’
- class SoftwareVersion(name=None, alias=None, accessibility=None, comments=None, contributions=None, contributor_affiliations=None, copyright=None, dependencies=None, description=None, digital_identifier=None, documentation=None, full_name=None, funding=None, has_variants=None, homepage=None, how_to_cite=None, implements=None, input_formats=None, is_dependency_of=None, is_input_to=None, is_part_of=None, is_preceded_by=None, is_variant_of=None, is_version_of=None, keywords=None, languages=None, learning_resources=None, operating_devices=None, operating_systems=None, output_formats=None, programming_languages=None, publication=None, publication_status=None, related_publications=None, release_date=None, repository=None, scopes=None, short_name=None, support_channels=None, usage_conditions=None, used_in=None, version_identifier=None, version_specification=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
accessibility (Accessibility) – Level to which something is accessible to the software version.
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
dependencies (Dependency) – no description available
description (str) – Longer statement or account giving the characteristics of the software version.
digital_identifier (DOI, GenericIdentifier, RRID, SWHID) – Digital handle to identify objects or legal persons.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the software version.
funding (Funding) – Money provided by a legal person for a particular purpose.
homepage (IRI) – Main website of the software version.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
implements (InterfaceVersion) – no description available
input_formats (ContentType) – Format of data that is put into a process or machine.
is_preceded_by (SoftwareVersion) – no description available
is_variant_of (SoftwareVersion) – no description available
is_version_of (Software) – no description available
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the software version.
languages (Language) – System of communication (words, their pronunciation, and the methods of combining them) used and understood by a particular community.
operating_devices (OperatingDevice) – no description available
operating_systems (OperatingSystem) – Software that controls the operation of a computer and directs the processing of programs.
output_formats (ContentType) – Format of data that comes out of, is delivered or produced by a process or machine.
programming_languages (ProgrammingLanguage) – Distinct set of instructions for computer programs in order to produce various kinds of output.
publication_status (PublicationStatus) – no description available
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
repository (FileRepository) – Place, room, or container where something is deposited or stored.
scopes (AnalysisTechnique, ContributionType, DataType, ExperimentalApproach, OperationalApproach, SoftwareApplicationCategory, SoftwareFeature, Technique, TermSuggestion) – Extent of something.
short_name (str) – Shortened or fully abbreviated name of the software version.
support_channels (str) – Way of communication used to interact with users or customers.
usage_conditions (License, UsageAgreement) – no description available
version_identifier (str) – Term or code used to identify the version of something.
version_specification (str) – no description available
comments (Comment) – reverse of ‘about’
has_variants (SoftwareVersion) – reverse of ‘is_variant_of’
is_dependency_of (ServiceDeployment) – reverse of ‘depends_on’
is_input_to (DataAnalysis, DataCopy, GenericComputation, ModelValidation, Optimization, Simulation, Visualization) – reverse of ‘inputs’
is_part_of (WorkflowRecipeVersion, Project, ResearchProductGroup, Setup) – reverse of ‘has_parts’
learning_resources (LearningResource) – reverse of ‘about’
publication (LivePaperVersion) – reverse of ‘about’
used_in (Environment, SoftwareAgent) – reverse of ‘software’
- class MetaDataModel(name=None, alias=None, comments=None, contributions=None, contributor_affiliations=None, description=None, digital_identifier=None, documentation=None, full_name=None, has_versions=None, homepage=None, how_to_cite=None, is_part_of=None, keywords=None, learning_resources=None, related_publications=None, short_name=None, support_channels=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
description (str) – Longer statement or account giving the characteristics of the meta data model.
digital_identifier (DOI, GenericIdentifier, RRID, SWHID) – Digital handle to identify objects or legal persons.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the meta data model.
homepage (IRI) – Main website of the meta data model.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the meta data model.
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
short_name (str) – Shortened or fully abbreviated name of the meta data model.
support_channels (str) – Way of communication used to interact with users or customers.
comments (Comment) – reverse of ‘about’
has_versions (MetaDataModelVersion) – reverse of ‘is_version_of’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
learning_resources (LearningResource) – reverse of ‘about’
- class MetaDataModelVersion(name=None, alias=None, accessibility=None, comments=None, contributions=None, contributor_affiliations=None, copyright=None, description=None, digital_identifier=None, documentation=None, full_name=None, funding=None, has_variants=None, homepage=None, how_to_cite=None, is_part_of=None, is_preceded_by=None, is_used_by=None, is_variant_of=None, is_version_of=None, keywords=None, learning_resources=None, publication_status=None, related_publications=None, release_date=None, repository=None, serialization_formats=None, short_name=None, specification_formats=None, support_channels=None, type=None, usage_conditions=None, version_identifier=None, version_specification=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
accessibility (Accessibility) – Level to which something is accessible to the meta data model version.
contributions (Contribution) – no description available
contributor_affiliations (Affiliation) – no description available
copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
description (str) – Longer statement or account giving the characteristics of the meta data model version.
digital_identifier (DOI, GenericIdentifier, RRID, SWHID) – Digital handle to identify objects or legal persons.
documentation (DOI, File, ISBN, WebResource) – no description available
full_name (str) – Whole, non-abbreviated name of the meta data model version.
funding (Funding) – Money provided by a legal person for a particular purpose.
homepage (IRI) – Main website of the meta data model version.
how_to_cite (str) – Preferred format for citing a particular object or legal person.
is_preceded_by (MetaDataModelVersion) – no description available
is_variant_of (MetaDataModelVersion) – no description available
is_version_of (MetaDataModel) – no description available
keywords (AccessChannel, AccessEligibilityType, AccessForm, AccessProcessType, ActionStatusType, AgeCategory, AgeReference, AnalysisTechnique, AnatomicalAxesOrientation, AnatomicalCavity, AnatomicalIdentificationType, AnatomicalPlane, AnnotationCriteriaType, AnnotationType, AtlasType, AuditoryStimulusType, BiologicalOrder, BiologicalProcess, BiologicalSex, BreedingType, CellCultureType, CellType, ChemicalMixtureType, Colormap, CommunicationInterfaceType, CommunicationProtocol, ContributionType, CranialWindowConstructionType, CranialWindowReinforcementType, CriteriaQualityType, DataType, DependencyImpact, DeploymentEnvironmentType, DeviceMountingType, DeviceType, DifferenceMeasure, Disease, DiseaseModel, EducationalLevel, ElectricalStimulusType, ExperimentalApproach, ExternalBodyRegion, FileBundleGrouping, FileRepositoryType, FileUsageRole, GeneticStrainType, GustatoryStimulusType, Handedness, Language, Laterality, LearningResourceType, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, MeasuredQuantity, MeasuredSignalType, MetaDataModelType, ModelAbstractionLevel, ModelScope, ModificationConsentRequirement, ModificationConstraint, ModificationForm, ModificationScope, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OperatingDevice, OperatingSystem, OperationalApproach, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, OrganizationType, PatchClampVariation, PaymentModelType, PreparationType, ProgrammingLanguage, ProjectType, PublicationStatus, PulseShape, QualitativeOverlap, SemanticDataType, SetupType, SignalDirectionality, SkeletalStructure, SoftwareApplicationCategory, SoftwareFeature, SovereignState, SpatialEncoding, Species, StimulationApproach, StimulationTechnique, SubcellularEntity, SubjectAttribute, SupranationalBody, TactileStimulusType, Technique, TermSuggestion, Terminology, TissueSampleAttribute, TissueSampleType, TissueStructure, TypeOfUncertainty, UnitOfMeasurement, VascularStructure, VisualStimulusType, WeightType) – Significant word or concept that are representative of the meta data model version.
publication_status (PublicationStatus) – no description available
related_publications (DOI, GenericIdentifier, HANDLE, ISBN, ISSN, Book, Chapter, ScholarlyArticle) – Reference to something that was made available for the general public to see or buy.
release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
repository (FileRepository) – Place, room, or container where something is deposited or stored.
serialization_formats (ContentType) – Form in which a particular data structure or object state is translated to for storage.
short_name (str) – Shortened or fully abbreviated name of the meta data model version.
specification_formats (ContentType) – Form in which a particular data structure or object state is specified in.
support_channels (str) – Way of communication used to interact with users or customers.
type (MetaDataModelType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
usage_conditions (License, UsageAgreement) – no description available
version_identifier (str) – Term or code used to identify the version of something.
version_specification (str) – no description available
comments (Comment) – reverse of ‘about’
has_variants (MetaDataModelVersion) – reverse of ‘is_variant_of’
is_part_of (Project, ResearchProductGroup) – reverse of ‘has_parts’
is_used_by (ServiceDeployment) – reverse of ‘uses’
learning_resources (LearningResource) – reverse of ‘about’
Research¶
- class BehavioralProtocol(name=None, described_in=None, description=None, internal_identifier=None, is_used_to_group=None, stimulations=None, stimulus_types=None, used_in=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about a protocol used in an experiment studying human or animal behavior.
- Parameters:
described_in (DOI, File, WebResource) – no description available
description (str) – Longer statement or account giving the characteristics of the behavioral protocol.
internal_identifier (str) – Term or code that identifies the behavioral protocol within a particular product.
name (str) – Word or phrase that constitutes the distinctive designation of the behavioral protocol.
stimulations (StimulationApproach, StimulationTechnique) – no description available
stimulus_types (AuditoryStimulusType, ElectricalStimulusType, GustatoryStimulusType, OlfactoryStimulusType, OpticalStimulusType, TactileStimulusType, VisualStimulusType) – no description available
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
used_in (DatasetVersion, ProtocolExecution, SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState, DynamicMRIAcquisition) – reverse of associated_protocols, behavioral_protocols, protocols
- class Protocol(name=None, described_in=None, description=None, stimulus_types=None, techniques=None, used_in=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a research project.
- Parameters:
described_in (DOI, File, WebResource) – no description available
description (str) – Longer statement or account giving the characteristics of the protocol.
name (str) – Word or phrase that constitutes the distinctive designation of the protocol.
stimulus_types (AuditoryStimulusType, ElectricalStimulusType, GustatoryStimulusType, OlfactoryStimulusType, OpticalStimulusType, TactileStimulusType, VisualStimulusType) – no description available
techniques (AnalysisTechnique, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, SpatialEncoding, StimulationApproach, StimulationTechnique, Technique) – Method of accomplishing a desired aim.
used_in (DatasetVersion, ProtocolExecution, SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState, CellPatching, ElectrodePlacement, RecordingActivity, DynamicMRIAcquisition, StaticMRIAcquisition, CranialWindowPreparation, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of associated_protocols, protocols
- class ProtocolExecution(lookup_label=None, based_on_protocol_execution=None, behavioral_protocols=None, custom_property_sets=None, description=None, end_time=None, inputs=None, is_part_of=None, outputs=None, performed_by=None, preparation_design=None, protocols=None, start_time=None, study_targets=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a protocol execution.
- Parameters:
behavioral_protocols (BehavioralProtocol) – no description available
custom_property_sets (CustomPropertySet) – no description available
description (str) – Longer statement or account giving the characteristics of the protocol execution.
end_time (datetime, time) – no description available
inputs (File, FileBundle, SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState, AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – Something or someone that is put into or participates in a process or machine.
is_part_of (DatasetVersion) – Reference to the ensemble of multiple things or beings.
lookup_label (str) – no description available
outputs (File, FileBundle, SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – Something or someone that comes out of, is delivered or produced by a process or machine.
performed_by (SoftwareAgent, Person) – no description available
preparation_design (PreparationType) – no description available
protocols (Protocol) – Plan that describes the process of a scientific or medical experiment, treatment, or procedure.
start_time (datetime, time) – no description available
study_targets (AnatomicalCavity, AuditoryStimulusType, BiologicalOrder, BiologicalSex, BreedingType, CellCultureType, CellType, DeviceType, Disease, DiseaseModel, ElectricalStimulusType, ExternalBodyRegion, GeneticStrainType, GustatoryStimulusType, Handedness, MolecularEntity, MuscularStructure, NervousSystemStructure, OlfactoryStimulusType, OpticalStimulusType, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, Species, SubcellularEntity, TactileStimulusType, TermSuggestion, TissueSampleType, TissueStructure, VascularStructure, VisualStimulusType, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.
based_on_protocol_execution (AtlasAnnotation, CustomAnnotation) – reverse of ‘criteria’
- class Strain(name=None, alternate_identifiers=None, background_strains=None, breeding_type=None, description=None, digital_identifier=None, disease_models=None, genetic_strain_type=None, is_background_strain_of=None, is_species_of=None, laboratory_code=None, ontology_identifiers=None, phenotype=None, species=None, stock_number=None, synonyms=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
alternate_identifiers (str) – no description available
background_strains (Strain) – no description available
breeding_type (BreedingType) – no description available
description (str) – Longer statement or account giving the characteristics of the strain.
digital_identifier (RRID) – Digital handle to identify objects or legal persons.
disease_models (Disease, DiseaseModel) – no description available
genetic_strain_type (GeneticStrainType) – no description available
laboratory_code (str) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the strain.
ontology_identifiers (str) – Term or code used to identify the strain registered within a particular ontology.
phenotype (str) – Physical expression of one or more genes of an organism.
species (Species) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
stock_number (StockNumber) – no description available
synonyms (str) – Words or expressions used in the same language that have the same or nearly the same meaning in some or all senses.
is_background_strain_of (Strain) – reverse of ‘background_strains’
is_species_of (Subject, SubjectGroup, TissueSample, TissueSampleCollection) – reverse of ‘species’
- class Subject(lookup_label=None, biological_sex=None, has_study_results_in=None, internal_identifier=None, is_part_of=None, is_used_to_group=None, species=None, studied_states=None, used_in=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a subject.
- Parameters:
biological_sex (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.
internal_identifier (str) – Term or code that identifies the subject within a particular product.
is_part_of (SubjectGroup) – Reference to the ensemble of multiple things or beings.
lookup_label (str) – no description available
species (Species, Strain) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
studied_states (SubjectState) – Reference to a point in time at which the subject was studied in a particular mode or condition.
has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
used_in (AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘used_specimens’
- class SubjectGroup(lookup_label=None, additional_remarks=None, biological_sexes=None, has_parts=None, has_study_results_in=None, internal_identifier=None, is_part_of=None, is_used_to_group=None, number_of_subjects=None, species=None, studied_states=None, used_in=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
biological_sexes (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.
internal_identifier (str) – Term or code that identifies the subject group within a particular product.
is_part_of (SubjectGroup) – Reference to the ensemble of multiple things or beings.
lookup_label (str) – no description available
number_of_subjects (int) – no description available
species (Species, Strain) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
studied_states (SubjectGroupState) – Reference to a point in time at which the subject group was studied in a particular mode or condition.
has_parts (Subject, SubjectGroup) – reverse of ‘is_part_of’
has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
used_in (AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘used_specimens’
- class SubjectGroupState(lookup_label=None, additional_remarks=None, age=None, age_categories=None, associated_protocols=None, attributes=None, descended_from=None, handedness=None, has_children=None, has_study_results_in=None, internal_identifier=None, is_input_to=None, is_output_of=None, is_state_of=None, is_used_to_group=None, pathologies=None, relative_time_indication=None, weight=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
age (SpecimenAge) – Time of life or existence at which some particular qualification, capacity or event arises.
age_categories (AgeCategory) – Distinct life cycle class that is defined by a similar age or age range (developmental stage) within a group of individual beings.
associated_protocols (Protocol, BehavioralProtocol) – no description available
attributes (SubjectAttribute) – no description available
descended_from (SubjectGroupState) – no description available
handedness (Handedness) – Degree to which an organism prefers one hand or foot over the other hand or foot during the performance of a task.
internal_identifier (str) – Term or code that identifies the subject group state within a particular product.
lookup_label (str) – no description available
pathologies (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.
relative_time_indication (QuantitativeValue, QuantitativeValueRange) – no description available
weight (SpecimenWeight) – Amount that a thing or being weighs.
has_children (SubjectGroupState, TissueSampleCollectionState, TissueSampleState) – reverse of ‘descended_from’
has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’
is_input_to (RecordingActivity, TissueCulturePreparation) – reverse of ‘inputs’
is_output_of (ProtocolExecution, StimulationActivity) – reverse of ‘outputs’
is_state_of (SubjectGroup) – reverse of ‘studied_states’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
- class SubjectState(lookup_label=None, additional_remarks=None, age=None, age_category=None, associated_protocols=None, attributes=None, descended_from=None, handedness=None, has_children=None, has_study_results_in=None, internal_identifier=None, is_input_to=None, is_output_of=None, is_state_of=None, is_used_to_group=None, pathologies=None, relative_time_indication=None, used_in=None, weight=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a temporary state of a subject.
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
age (SpecimenAge) – Time of life or existence at which some particular qualification, capacity or event arises.
age_category (AgeCategory) – Distinct life cycle class that is defined by a similar age or age range (developmental stage) within a group of individual beings.
associated_protocols (Protocol, BehavioralProtocol) – no description available
attributes (SubjectAttribute) – no description available
descended_from (SubjectState) – no description available
handedness (Handedness) – Degree to which an organism prefers one hand or foot over the other hand or foot during the performance of a task.
internal_identifier (str) – Term or code that identifies the subject state within a particular product.
lookup_label (str) – no description available
pathologies (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.
relative_time_indication (QuantitativeValue, QuantitativeValueRange) – no description available
weight (SpecimenWeight) – Amount that a thing or being weighs.
has_children (SubjectState, TissueSampleCollectionState, TissueSampleState) – reverse of ‘descended_from’
has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’
is_input_to (RecordingActivity, DynamicMRIAcquisition, StaticMRIAcquisition, TissueCulturePreparation, TissueSampleSlicing) – reverse of ‘inputs’
is_output_of (ProtocolExecution, CellPatching, ElectrodePlacement, CranialWindowPreparation, StimulationActivity) – reverse of ‘outputs’
is_state_of (Subject) – reverse of ‘studied_states’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
used_in (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – reverse of ‘used_specimen’
- class TissueSample(lookup_label=None, anatomical_locations=None, biological_sex=None, has_study_results_in=None, internal_identifier=None, is_part_of=None, is_used_to_group=None, lateralities=None, origin=None, species=None, studied_states=None, type=None, used_in=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a tissue sample.
- Parameters:
anatomical_locations (AnatomicalCavity, CellType, ExternalBodyRegion, MuscularStructure, NervousSystemStructure, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, SubcellularEntity, TissueStructure, VascularStructure, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – no description available
biological_sex (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.
internal_identifier (str) – Term or code that identifies the tissue sample within a particular product.
is_part_of (TissueSampleCollection) – Reference to the ensemble of multiple things or beings.
lateralities (Laterality) – Differentiation between a pair of lateral homologous parts of the body.
lookup_label (str) – no description available
origin (CellType, Organ, OrganismSubstance) – Source at which something begins or rises, or from which something derives.
species (Species, Strain) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
studied_states (TissueSampleState) – Reference to a point in time at which the tissue sample was studied in a particular mode or condition.
type (TissueSampleType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
used_in (AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘used_specimens’
- class TissueSampleCollection(lookup_label=None, additional_remarks=None, anatomical_locations=None, biological_sexes=None, has_parts=None, has_study_results_in=None, internal_identifier=None, is_part_of=None, is_used_to_group=None, lateralities=None, number_of_tissue_samples=None, origins=None, species=None, studied_states=None, types=None, used_in=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
anatomical_locations (AnatomicalCavity, CellType, ExternalBodyRegion, MuscularStructure, NervousSystemStructure, Organ, OrganSystemStructure, OrganismSubstance, OrganismSystem, SkeletalStructure, SubcellularEntity, TissueStructure, VascularStructure, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – no description available
biological_sexes (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.
internal_identifier (str) – Term or code that identifies the tissue sample collection within a particular product.
is_part_of (TissueSampleCollection) – Reference to the ensemble of multiple things or beings.
lateralities (Laterality) – Differentiation between a pair of lateral homologous parts of the body.
lookup_label (str) – no description available
number_of_tissue_samples (int) – no description available
origins (CellType, Organ, OrganismSubstance) – Source at which something begins or rises, or from which something derives.
species (Species, Strain) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
studied_states (TissueSampleCollectionState) – Reference to a point in time at which the tissue sample collection was studied in a particular mode or condition.
types (TissueSampleType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
has_parts (TissueSample, TissueSampleCollection) – reverse of ‘is_part_of’
has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
used_in (AnatomicalAtlasVersion, CommonCoordinateFrameworkVersion) – reverse of ‘used_specimens’
- class TissueSampleCollectionState(lookup_label=None, additional_remarks=None, age=None, associated_protocols=None, attributes=None, descended_from=None, has_children=None, has_study_results_in=None, internal_identifier=None, is_input_to=None, is_output_of=None, is_state_of=None, is_used_to_group=None, pathologies=None, relative_time_indication=None, weight=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
age (SpecimenAge) – Time of life or existence at which some particular qualification, capacity or event arises.
associated_protocols (Protocol, BehavioralProtocol) – no description available
attributes (TissueSampleAttribute) – no description available
descended_from (SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – no description available
internal_identifier (str) – Term or code that identifies the tissue sample collection state within a particular product.
lookup_label (str) – no description available
pathologies (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.
relative_time_indication (QuantitativeValue, QuantitativeValueRange) – no description available
weight (SpecimenWeight) – Amount that a thing or being weighs.
has_children (TissueSampleCollectionState, TissueSampleState) – reverse of ‘descended_from’
has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’
is_input_to (RecordingActivity, TissueCulturePreparation) – reverse of ‘inputs’
is_output_of (ProtocolExecution, TissueSampleSlicing, StimulationActivity) – reverse of ‘outputs’
is_state_of (TissueSampleCollection) – reverse of ‘studied_states’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
- class TissueSampleState(lookup_label=None, additional_remarks=None, age=None, associated_protocols=None, attributes=None, descended_from=None, has_children=None, has_study_results_in=None, internal_identifier=None, is_input_to=None, is_output_of=None, is_state_of=None, is_used_to_group=None, pathologies=None, relative_time_indication=None, used_in=None, weight=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information on a temporary state of a tissue sample.
- Parameters:
additional_remarks (str) – Mention of what deserves additional attention or notice.
age (SpecimenAge) – Time of life or existence at which some particular qualification, capacity or event arises.
associated_protocols (Protocol, BehavioralProtocol) – no description available
attributes (TissueSampleAttribute) – no description available
descended_from (SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – no description available
internal_identifier (str) – Term or code that identifies the tissue sample state within a particular product.
lookup_label (str) – no description available
pathologies (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.
relative_time_indication (QuantitativeValue, QuantitativeValueRange) – no description available
weight (SpecimenWeight) – Amount that a thing or being weighs.
has_children (TissueSampleCollectionState, TissueSampleState) – reverse of ‘descended_from’
has_study_results_in (DatasetVersion) – reverse of ‘studied_specimens’
is_input_to (RecordingActivity, DynamicMRIAcquisition, StaticMRIAcquisition) – reverse of ‘inputs’
is_output_of (ProtocolExecution, CellPatching, ElectrodePlacement, TissueCulturePreparation, TissueSampleSlicing, StimulationActivity) – reverse of ‘outputs’
is_state_of (TissueSample) – reverse of ‘studied_states’
is_used_to_group (FileBundle) – reverse of ‘grouped_by’
used_in (ElectrodeArrayUsage, ElectrodeUsage, PipetteUsage, MRICoilUsage, MRIScannerUsage, SlicingDeviceUsage) – reverse of ‘used_specimen’
- class Configuration(lookup_label=None, configuration=None, format=None, is_configuration_of=None, specifies=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about the properties or parameters of an entity or process.
- Parameters:
configuration (str) – no description available
format (ContentType) – Method of digitally organizing and structuring data or information.
lookup_label (str) – no description available
is_configuration_of (Environment, ValidationTestVersion, WorkflowExecution, ModelVersion) – reverse of ‘configuration’
specifies (EphysStimulus) – reverse of ‘specifications’
- class CustomPropertySet(context=None, data_location=None, relevant_for=None, id=None, data=None, space=None, release_status=None)[source]¶
Bases:
KGEmbedded,CustomPropertySetStructured information about properties of an entity that are not represented in an openMINDS schema.
- Parameters:
context (str) – no description available
data_location (Configuration, File, PropertyValueList) – no description available
relevant_for (AnalysisTechnique, MRIFatSuppressionTechnique, MRIParallelAcquisitionTechnique, MRIPulseSequence, MRISpoilingTechnique, MRIWeighting, SpatialEncoding, StimulationApproach, StimulationTechnique, Technique) – Reference to what or whom the custom property set bears significance.
- class PropertyValueList(lookup_label=None, defines_environment_of=None, is_configuration_of=None, property_value_pairs=None, specifies=None, id=None, data=None, space=None, release_status=None)[source]¶
An identifiable list of property-value pairs.
- Parameters:
lookup_label (str) – no description available
property_value_pairs (NumericalProperty, StringProperty) – no description available
defines_environment_of (LaunchConfiguration) – reverse of ‘environment_variable’
is_configuration_of (ValidationTestVersion, ModelVersion) – reverse of ‘configuration’
specifies (HardwareProduct, CustomAnnotation, EphysStimulus) – reverse of ‘specification’
- class StringProperty(name=None, external_definition_of_name=None, value=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
external_definition_of_name (IRI) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the string property.
value (str) – Entry for a property.
- class NumericalProperty(name=None, external_definition_of_name=None, values=None, id=None, data=None, space=None, release_status=None)[source]¶
Structured information about a property of some entity or process whose value is a number.
- Parameters:
external_definition_of_name (IRI) – no description available
name (str) – Word or phrase that constitutes the distinctive designation of the numerical property.
values (QuantitativeValue, QuantitativeValueRange) – Entry for a property.
- class SpecimenAge(age=None, reference=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.
reference (AgeReference) – no description available
- class SpecimenWeight(type=None, weight=None, id=None, data=None, space=None, release_status=None)[source]¶
<description not available>
- Parameters:
type (WeightType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.