openminds.core

Actors

class fairgraph.openminds.core.actors.person.Person(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a person.

Parameters:
  • digital_identifiers (ORCID) – Digital handle to identify objects or legal persons.
  • contact_information (ContactInformation) – Any available way used to contact a person or business (e.g., address, phone number, email address, etc.).
  • family_name (str) – Name borne in common by members of a family.
  • given_name (str) – Name given to a person, including all potential middle names, but excluding the family name.
  • affiliations (Affiliation) – Declaration of a person being closely associated to an organization.
class fairgraph.openminds.core.actors.contact_information.ContactInformation(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:email (str) – Address to which or from which an electronic mail can be sent.
class fairgraph.openminds.core.actors.organization.Organization(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on an organization.

Parameters:
  • digital_identifiers (GRIDID, RORID) – Digital handle to identify objects or legal persons.
  • name (str) – Whole, non-abbreviated name of the organization.
  • has_parent (Organization) – Reference to a parent object or legal person.
  • homepage (URL) – Main website of the organization.
  • alias (str) – Shortened or fully abbreviated name of the organization.
class fairgraph.openminds.core.actors.affiliation.Affiliation(data=None, **properties)[source]

Bases: fairgraph.base_v3.EmbeddedMetadata

Parameters:
  • start_date (date) – Date in the Gregorian calendar at which something begins in time
  • end_date (date) – Date in the Gregorian calendar at which something terminates in time.
  • organization (Organization) – Legally accountable, administrative and functional structure.
class fairgraph.openminds.core.actors.contribution.Contribution(data=None, **properties)[source]

Bases: fairgraph.base_v3.EmbeddedMetadata

Structured information on the contribution made to a research product.

Parameters:
  • contribution_types (ContributionType) – Distinct class of what was given or supplied as a part or share.
  • contributor (Organization, Person) – Legal person that gave or supplied something as a part or share.

Data

class fairgraph.openminds.core.data.content_type.ContentType(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on the content type of a file instance, bundle or repository.

Parameters:
  • file_extensions (str) – String of characters attached as suffix to the names of files of a particular format.
  • data_types (DataType) – no description available
  • description (str) – Longer statement or account giving the characteristics of the content type.
  • related_media_type (IRI) – Reference to an official two-part identifier for file formats and format contents.
  • name (str) – Word or phrase that constitutes the distinctive designation of the content type.
  • specification (IRI) – Detailed and precise presentation of, or proposal for something.
  • synonyms (str) – Words or expressions used in the same language that have the same or nearly the same meaning in some or all senses.
class fairgraph.openminds.core.data.file.File(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a file instances.

Parameters:
  • content (str) – Something that is contained.
  • file_repository (FileRepository) – no description available
  • format (ContentType) – Method of digitally organizing and structuring data or information.
  • hash (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.
  • iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.
  • is_part_of (FileBundle) – Reference to the ensemble of multiple things or beings.
  • name (str) – Word or phrase that constitutes the distinctive designation of the file.
  • special_usage_role (FileUsageRole) – Particular function of something when it is used.
  • storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.
class fairgraph.openminds.core.data.file_bundle.FileBundle(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a bundle of file instances.

Parameters:
  • content (str) – Something that is contained.
  • descended_from (Technique, BehavioralProtocol, File, FileBundle, SubjectGroupState, SubjectState, TissueSampleCollectionState, TissueSampleState) – no description available
  • format (ContentType) – Method of digitally organizing and structuring data or information.
  • grouping_type (FileBundleGrouping) – no description available
  • hash (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.
  • is_part_of (FileBundle, FileRepository) – Reference to the ensemble of multiple things or beings.
  • name (str) – Word or phrase that constitutes the distinctive designation of the file bundle.
  • storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.
class fairgraph.openminds.core.data.file_repository.FileRepository(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a file repository.

Parameters:
  • content_type_patterns (ContentTypePattern) – no description available
  • format (ContentType) – Method of digitally organizing and structuring data or information.
  • hash (Hash) – Term used for the process of converting any data into a single value. Often also directly refers to the resulting single value.
  • hosted_by (Organization) – Reference to an organization that provides facilities and services for something.
  • iri (IRI) – Stands for Internationalized Resource Identifier which is an internet protocol standard that builds on the URI protocol, extending the set of permitted characters to include Unicode/ISO 10646.
  • name (str) – Word or phrase that constitutes the distinctive designation of the file repository.
  • repository_type (FileRepositoryType) – no description available
  • storage_size (QuantitativeValue) – Quantitative value defining how much disk space is used by an object on a computer system.
  • structure_pattern (FileRepositoryStructure) – no description available
class fairgraph.openminds.core.data.file_repository_structure.FileRepositoryStructure(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • file_path_patterns (FilePathPattern) – no description available
  • lookup_label (str) – no description available
class fairgraph.openminds.core.data.license.License(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a used license.

Parameters:
  • name (str) – Whole, non-abbreviated name of the license.
  • legal_code (IRI) – Type of legislation that claims to cover the law system (complete or parts) as it existed at the time the code was enacted.
  • alias (str) – Shortened or fully abbreviated name of the license.
  • webpages (str) – Hypertext document (block of information) found on the World Wide Web.

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • data_location (File, FileBundle) – no description available
  • name (str) – Word or phrase that constitutes the distinctive designation of the service link.
  • open_data_in (URL) – no description available
  • service (Service) – no description available

Miscellaneous

class fairgraph.openminds.core.miscellaneous.doi.DOI(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:identifier (str) – Term or code used to identify the DOI.
class fairgraph.openminds.core.miscellaneous.funding.Funding(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on used funding.

Parameters:
  • acknowledgement (str) – Offical declaration or avowal of appreciation of an act or achievement.
  • award_number (str) – Machine-readable identifier for a benefit that is conferred or bestowed on the basis of merit or need.
  • award_title (str) – Human-readable identifier for a benefit that is conferred or bestowed on the basis of merit or need.
  • funder (Organization, Person) – Legal person that provides money for a particular purpose.
class fairgraph.openminds.core.miscellaneous.gridid.GRIDID(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:identifier (str) – Term or code used to identify the GRIDID.
class fairgraph.openminds.core.miscellaneous.isbn.ISBN(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:identifier (str) – Term or code used to identify the ISBN.
class fairgraph.openminds.core.miscellaneous.orcid.ORCID(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:identifier (str) – Term or code used to identify the ORCID.
class fairgraph.openminds.core.miscellaneous.rorid.RORID(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:identifier (str) – Term or code used to identify the RORID.
class fairgraph.openminds.core.miscellaneous.swhid.SWHID(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:identifier (str) – Term or code used to identify the SWHID.
class fairgraph.openminds.core.miscellaneous.url.URL(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:url (IRI) – no description available

Products

class fairgraph.openminds.core.products.dataset.Dataset(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on data originating from human/animal studies or simulations (concept level).

Parameters:
  • authors (Organization, Person) – Creator of a literary or creative work, as well as a dataset publication.
  • digital_identifier (DOI) – Digital handle to identify objects or legal persons.
  • versions (DatasetVersion) – Reference to variants of an original.
  • custodians (Organization, Person) – Legal person entrusted with guarding and maintaining property or records.
  • description (str) – Longer statement or account giving the characteristics of the dataset.
  • name (str) – Whole, non-abbreviated name of the dataset.
  • homepage (URL) – Main website of the dataset.
  • how_to_cite (str) – Preferred format for citing a particular object or legal person.
  • alias (str) – Shortened or fully abbreviated name of the dataset.
class fairgraph.openminds.core.products.dataset_version.DatasetVersion(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on data originating from human/animal studies or simulations (version level).

Parameters:
  • authors (Organization, Person) – Creator of a literary or creative work, as well as a dataset publication.
  • behavioral_protocols (BehavioralProtocol) – no description available
  • digital_identifier (DOI) – Digital handle to identify objects or legal persons.
  • ethics_assessment (EthicsAssessment) – Judgment about the applied principles of conduct governing an individual or a group.
  • experimental_approachs (ExperimentalApproach) – no description available
  • input_data (DOI, File, FileBundle) – Data that is put into a process or machine.
  • is_alternative_version_of (DatasetVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.
  • is_new_version_of (DatasetVersion) – Reference to a previous (potentially outdated) particular form of something.
  • license (License) – Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.
  • preparation_designs (PreparationType) – no description available
  • studied_specimens (Subject, SubjectGroup, TissueSample, TissueSampleCollection) – no description available
  • techniques (Technique) – Method of accomplishing a desired aim.
  • data_types (SemanticDataType) – no description available
  • study_targets (BiologicalOrder, BiologicalSex, CellType, Disease, DiseaseModel, Handedness, Organ, Phenotype, Species, Strain, TermSuggestion, UBERONParcellation, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Structure or function that was targeted within a study.
  • accessibility (ProductAccessibility) – Level to which something is accessible to the dataset version.
  • copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
  • custodians (Organization, Person) – Legal person entrusted with guarding and maintaining property or records.
  • description (str) – Longer statement or account giving the characteristics of the dataset version.
  • full_documentation (DOI, File, URL) – Non-abridged instructions, comments, and information for using a particular product.
  • name (str) – Whole, non-abbreviated name of the dataset version.
  • funding (Funding) – Money provided by a legal person for a particular purpose.
  • homepage (URL) – Main website of the dataset version.
  • how_to_cite (str) – Preferred format for citing a particular object or legal person.
  • keywords (BiologicalOrder, BiologicalSex, CellType, Disease, DiseaseModel, Handedness, Organ, Phenotype, Species, Strain, TermSuggestion, UBERONParcellation, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Significant word or concept that are representative of the dataset version.
  • other_contributions (Contribution) – Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.
  • related_publications (DOI, ISBN) – Reference to something that was made available for the general public to see or buy.
  • release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
  • repository (FileRepository) – Place, room, or container where something is deposited or stored.
  • alias (str) – Shortened or fully abbreviated name of the dataset version.
  • support_channels (str) – Way of communication used to interact with users or customers.
  • version_identifier (str) – Term or code used to identify the version of something.
  • version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.
class fairgraph.openminds.core.products.model.Model(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a computational model (concept level).

Parameters:
class fairgraph.openminds.core.products.model_version.ModelVersion(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a computational model (version level).

Parameters:
  • developers (Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).
  • digital_identifier (DOI, SWHID) – Digital handle to identify objects or legal persons.
  • format (ContentType) – Method of digitally organizing and structuring data or information.
  • input_data (DOI, File, FileBundle) – Data that is put into a process or machine.
  • is_alternative_version_of (ModelVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.
  • is_new_version_of (ModelVersion) – Reference to a previous (potentially outdated) particular form of something.
  • licenses (License) – Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.
  • output_data (DOI, File, FileBundle) – Data that comes out of, is delivered or produced by a process or machine.
  • accessibility (ProductAccessibility) – Level to which something is accessible to the model version.
  • copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
  • custodians (Organization, Person) – Legal person entrusted with guarding and maintaining property or records.
  • description (str) – Longer statement or account giving the characteristics of the model version.
  • full_documentation (DOI, File, URL) – Non-abridged instructions, comments, and information for using a particular product.
  • name (str) – Whole, non-abbreviated name of the model version.
  • funding (Funding) – Money provided by a legal person for a particular purpose.
  • homepage (URL) – Main website of the model version.
  • how_to_cite (str) – Preferred format for citing a particular object or legal person.
  • keywords (BiologicalOrder, BiologicalSex, CellType, Disease, DiseaseModel, Handedness, Organ, Phenotype, Species, Strain, TermSuggestion, UBERONParcellation, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Significant word or concept that are representative of the model version.
  • other_contributions (Contribution) – Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.
  • related_publications (DOI, ISBN) – Reference to something that was made available for the general public to see or buy.
  • release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
  • repository (FileRepository) – Place, room, or container where something is deposited or stored.
  • alias (str) – Shortened or fully abbreviated name of the model version.
  • support_channels (str) – Way of communication used to interact with users or customers.
  • version_identifier (str) – Term or code used to identify the version of something.
  • version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.
class fairgraph.openminds.core.products.project.Project(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a research project.

Parameters:
  • description (str) – Longer statement or account giving the characteristics of the project.
  • name (str) – Whole, non-abbreviated name of the project.
  • has_research_products (Dataset, DatasetVersion, MetaDataModel, MetaDataModelVersion, Model, ModelVersion, Software, SoftwareVersion) – Reference to subsidiary research products.
  • homepage (URL) – Main website of the project.
  • coordinators (Organization, Person) – Legal person who organizes the collaborative work of people or groups.
  • alias (str) – Shortened or fully abbreviated name of the project.
class fairgraph.openminds.core.products.software.Software(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a software tool (concept level).

Parameters:
  • developers (Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).
  • digital_identifier (DOI, SWHID) – Digital handle to identify objects or legal persons.
  • versions (SoftwareVersion) – Reference to variants of an original.
  • custodians (Organization, Person) – Legal person entrusted with guarding and maintaining property or records.
  • description (str) – Longer statement or account giving the characteristics of the software.
  • name (str) – Whole, non-abbreviated name of the software.
  • homepage (URL) – Main website of the software.
  • how_to_cite (str) – Preferred format for citing a particular object or legal person.
  • alias (str) – Shortened or fully abbreviated name of the software.
class fairgraph.openminds.core.products.software_version.SoftwareVersion(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • application_categories (SoftwareApplicationCategory) – Distinct class that groups software programs which perform a similar task or set of tasks.
  • developers (Organization, Person) – Legal person that creates or improves products or services (e.g., software, applications, etc.).
  • devices (OperatingDevice) – Piece of equipment or mechanism (hardware) designed to serve a special purpose or perform a special function.
  • digital_identifier (DOI, SWHID) – Digital handle to identify objects or legal persons.
  • has_components (SoftwareVersion) – Reference to an element of a collection.
  • features (SoftwareFeature) – Structure, form, or appearance that characterizes the software version.
  • requirements (str) – Something essential to the existence, occurrence or function of something else.
  • input_formats (ContentType) – Format of data that is put into a process or machine.
  • is_alternative_version_of (SoftwareVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.
  • is_new_version_of (SoftwareVersion) – Reference to a previous (potentially outdated) particular form of something.
  • languages (Language) – System of communication (words, their pronunciation, and the methods of combining them) used and understood by a particular community.
  • licenses (License) – Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.
  • operating_systems (OperatingSystem) – Software that controls the operation of a computer and directs the processing of programs.
  • output_formats (ContentType) – Format of data that comes out of, is delivered or produced by a process or machine.
  • programming_languages (ProgrammingLanguage) – Distinct set of instructions for computer programs in order to produce various kinds of output.
  • accessibility (ProductAccessibility) – Level to which something is accessible to the software version.
  • copyright (Copyright) – Exclusive and assignable legal right of an originator to reproduce, publish, sell, or distribute the matter and form of a creative work for a defined time period.
  • custodians (Organization, Person) – Legal person entrusted with guarding and maintaining property or records.
  • description (str) – Longer statement or account giving the characteristics of the software version.
  • full_documentation (DOI, File, URL) – Non-abridged instructions, comments, and information for using a particular product.
  • name (str) – Whole, non-abbreviated name of the software version.
  • funding (Funding) – Money provided by a legal person for a particular purpose.
  • homepage (URL) – Main website of the software version.
  • how_to_cite (str) – Preferred format for citing a particular object or legal person.
  • keywords (BiologicalOrder, BiologicalSex, CellType, Disease, DiseaseModel, Handedness, Organ, Phenotype, Species, Strain, TermSuggestion, UBERONParcellation, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – Significant word or concept that are representative of the software version.
  • other_contributions (Contribution) – Giving or supplying of something (such as money or time) as a part or share other than what is covered elsewhere.
  • related_publications (DOI, ISBN) – Reference to something that was made available for the general public to see or buy.
  • release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
  • repository (FileRepository) – Place, room, or container where something is deposited or stored.
  • alias (str) – Shortened or fully abbreviated name of the software version.
  • support_channels (str) – Way of communication used to interact with users or customers.
  • version_identifier (str) – Term or code used to identify the version of something.
  • version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.

Research

class fairgraph.openminds.core.research.behavioral_protocol.BehavioralProtocol(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • description (str) – Longer statement or account giving the characteristics of the behavioral protocol.
  • name (str) – Word or phrase that constitutes the distinctive designation of the behavioral protocol.
  • internal_identifier (str) – Term or code that identifies the behavioral protocol within a particular product.
  • stimulations (Stimulation) – no description available
class fairgraph.openminds.core.research.protocol.Protocol(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a research project.

Parameters:
  • description (str) – Longer statement or account giving the characteristics of the protocol.
  • name (str) – Word or phrase that constitutes the distinctive designation of the protocol.
  • stimulations (Stimulation) – no description available
  • techniques (Technique) – Method of accomplishing a desired aim.
class fairgraph.openminds.core.research.protocol_execution.ProtocolExecution(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a protocol execution.

Parameters:
class fairgraph.openminds.core.research.stimulation.Stimulation(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
class fairgraph.openminds.core.research.subject.Subject(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a subject.

Parameters:
  • is_part_of (SubjectGroup) – Reference to the ensemble of multiple things or beings.
  • studied_states (SubjectState) – Reference to a point in time at which the subject was studied in a particular mode or condition.
  • biological_sex (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.
  • internal_identifier (str) – Term or code that identifies the subject within a particular product.
  • lookup_label (str) – no description available
  • phenotype (Phenotype) – Physical expression of one or more genes of an organism.
  • species (Species) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
  • strain (Strain) – Group of presumed common ancestry with physiological but usually not morphological distinctions.
class fairgraph.openminds.core.research.subject_group.SubjectGroup(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • studied_states (SubjectGroupState) – Reference to a point in time at which the subject group was studied in a particular mode or condition.
  • additional_remarks (str) – Mention of what deserves additional attention or notice.
  • biological_sex (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.
  • internal_identifier (str) – Term or code that identifies the subject group within a particular product.
  • lookup_label (str) – no description available
  • phenotypes (Phenotype) – Physical expression of one or more genes of an organism.
  • quantity (int) – Total amount or number of things or beings.
  • species (Species) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
  • strains (Strain) – Group of presumed common ancestry with physiological but usually not morphological distinctions.
class fairgraph.openminds.core.research.subject_group_state.SubjectGroupState(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • age_categories (AgeCategory) – Distinct life cycle class that is defined by a similar age or age range (developmental stage) within a group of individual beings.
  • handedness (Handedness) – Degree to which an organism prefers one hand or foot over the other hand or foot during the performance of a task.
  • additional_remarks (str) – Mention of what deserves additional attention or notice.
  • age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.
  • lookup_label (str) – no description available
  • pathologys (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.
  • weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.
class fairgraph.openminds.core.research.subject_state.SubjectState(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a temporary state of a subject.

Parameters:
  • age_category (AgeCategory) – Distinct life cycle class that is defined by a similar age or age range (developmental stage) within a group of individual beings.
  • handedness (Handedness) – Degree to which an organism prefers one hand or foot over the other hand or foot during the performance of a task.
  • additional_remarks (str) – Mention of what deserves additional attention or notice.
  • age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.
  • lookup_label (str) – no description available
  • pathologys (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.
  • weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.
class fairgraph.openminds.core.research.tissue_sample.TissueSample(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a tissue sample.

Parameters:
  • is_part_of (TissueSampleCollection) – Reference to the ensemble of multiple things or beings.
  • laterality (Laterality) – Differentiation between a pair of lateral homologous parts of the body.
  • origin (CellType, Organ) – Source at which something begins or rises, or from which something derives.
  • studied_states (TissueSampleState) – Reference to a point in time at which the tissue sample was studied in a particular mode or condition.
  • anatomical_locations (UBERONParcellation, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – no description available
  • type (TissueSampleType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
  • biological_sex (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.
  • internal_identifier (str) – Term or code that identifies the tissue sample within a particular product.
  • lookup_label (str) – no description available
  • phenotype (Phenotype) – Physical expression of one or more genes of an organism.
  • species (Species) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
  • strain (Strain) – Group of presumed common ancestry with physiological but usually not morphological distinctions.
class fairgraph.openminds.core.research.tissue_sample_collection.TissueSampleCollection(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • anatomical_locations (UBERONParcellation, CustomAnatomicalEntity, ParcellationEntity, ParcellationEntityVersion) – no description available
  • laterality (Laterality) – Differentiation between a pair of lateral homologous parts of the body.
  • origins (CellType, Organ) – Source at which something begins or rises, or from which something derives.
  • studied_states (TissueSampleCollectionState) – Reference to a point in time at which the tissue sample collection was studied in a particular mode or condition.
  • types (TissueSampleType) – Distinct class to which a group of entities or concepts with similar characteristics or attributes belong to.
  • additional_remarks (str) – Mention of what deserves additional attention or notice.
  • biological_sex (BiologicalSex) – Differentiation of individuals of most species (animals and plants) based on the type of gametes they produce.
  • internal_identifier (str) – Term or code that identifies the tissue sample collection within a particular product.
  • lookup_label (str) – no description available
  • phenotypes (Phenotype) – Physical expression of one or more genes of an organism.
  • quantity (int) – Total amount or number of things or beings.
  • species (Species) – Category of biological classification comprising related organisms or populations potentially capable of interbreeding, and being designated by a binomial that consists of the name of a genus followed by a Latin or latinized uncapitalized noun or adjective.
  • strains (Strain) – Group of presumed common ancestry with physiological but usually not morphological distinctions.
class fairgraph.openminds.core.research.tissue_sample_collection_state.TissueSampleCollectionState(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • additional_remarks (str) – Mention of what deserves additional attention or notice.
  • age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.
  • lookup_label (str) – no description available
  • pathologys (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.
  • weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.
class fairgraph.openminds.core.research.tissue_sample_state.TissueSampleState(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a temporary state of a tissue sample.

Parameters:
  • additional_remarks (str) – Mention of what deserves additional attention or notice.
  • age (QuantitativeValue, QuantitativeValueRange) – Time of life or existence at which some particular qualification, capacity or event arises.
  • lookup_label (str) – no description available
  • pathologys (Disease, DiseaseModel) – Structural and functional deviation from the normal that constitutes a disease or characterizes a particular disease.
  • weight (QuantitativeValue, QuantitativeValueRange) – Amount that a thing or being weighs.