openminds.sands

class fairgraph.openminds.sands.atlas.brain_atlas.BrainAtlas(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a brain atlas (concept level).

Parameters:
  • authors (Organization, Person) – Creator of a literary or creative work, as well as a dataset publication.
  • digital_identifier (DOI, ISBN) – Digital handle to identify objects or legal persons.
  • has_terminology (ParcellationTerminology) – no description available
  • versions (BrainAtlasVersion) – Reference to variants of an original.
class fairgraph.openminds.sands.atlas.brain_atlas_version.BrainAtlasVersion(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Structured information on a brain atlas (version level).

Parameters:
  • authors (Organization, Person) – Creator of a literary or creative work, as well as a dataset publication.
  • coordinate_space (CommonCoordinateSpace) – Two or three dimensional geometric setting.
  • digital_identifier (DOI, ISBN) – Digital handle to identify objects or legal persons.
  • has_terminology_version (ParcellationTerminologyVersion) – no description available
  • is_alternative_version_of (BrainAtlasVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.
  • is_new_version_of (BrainAtlasVersion) – Reference to a previous (potentially outdated) particular form of something.
  • license (License) – Grant by a party to another party as an element of an agreement between those parties that permits to do, use, or own something.
  • ontology_identifier (IRI) – Term or code used to identify the brain atlas version registered within a particular ontology.
class fairgraph.openminds.sands.atlas.common_coordinate_space.CommonCoordinateSpace(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • anatomical_axes_orientation (AnatomicalAxesOrientation) – Relation between reference planes used in anatomy and mathematics.
  • axes_origins (QuantitativeValue) – Special point in a coordinate system used as a fixed point of reference for the geometry of the surrounding space.
  • default_images (File) – Two or three dimensional image that particluarly represents a specific coordinate space.
  • digital_identifier (DOI) – Digital handle to identify objects or legal persons.
  • name (str) – Whole, non-abbreviated name of the common coordinate space.
  • homepage (URL) – Main website of the common coordinate space.
  • how_to_cite (str) – Preferred format for citing a particular object or legal person.
  • native_unit (UnitOfMeasurement) – Determinate quantity used in the original measurement.
  • ontology_identifier (IRI) – Term or code used to identify the common coordinate space registered within a particular ontology.
  • release_date (date) – Fixed date on which a product is due to become or was made available for the general public to see or buy
  • alias (str) – Shortened or fully abbreviated name of the common coordinate space.
  • version_identifier (str) – Term or code used to identify the version of something.
class fairgraph.openminds.sands.non_atlas.custom_anatomical_entity.CustomAnatomicalEntity(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • has_annotation (CustomAnnotation) – no description available
  • name (str) – Word or phrase that constitutes the distinctive designation of the custom anatomical entity.
  • related_uberon_term (UBERONParcellation) – no description available
  • relation_assessments (QualitativeRelationAssessment, QuantitativeRelationAssessment) – no description available
class fairgraph.openminds.sands.non_atlas.custom_coordinate_space.CustomCoordinateSpace(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • anatomical_axes_orientation (AnatomicalAxesOrientation) – Relation between reference planes used in anatomy and mathematics.
  • axes_origins (QuantitativeValue) – Special point in a coordinate system used as a fixed point of reference for the geometry of the surrounding space.
  • default_images (File) – Two or three dimensional image that particluarly represents a specific coordinate space.
  • name (str) – Word or phrase that constitutes the distinctive designation of the custom coordinate space.
  • native_unit (UnitOfMeasurement) – Determinate quantity used in the original measurement.
class fairgraph.openminds.sands.atlas.parcellation_entity.ParcellationEntity(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • has_parents (ParcellationEntity) – Reference to a parent object or legal person.
  • versions (ParcellationEntityVersion) – Reference to variants of an original.
  • name (str) – Word or phrase that constitutes the distinctive designation of the parcellation entity.
  • ontology_identifier (IRI) – Term or code used to identify the parcellation entity registered within a particular ontology.
  • related_uberon_term (UBERONParcellation) – no description available
class fairgraph.openminds.sands.atlas.parcellation_entity_version.ParcellationEntityVersion(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • has_annotation (AtlasAnnotation) – no description available
  • has_parents (ParcellationEntity, ParcellationEntityVersion) – Reference to a parent object or legal person.
  • name (str) – Word or phrase that constitutes the distinctive designation of the parcellation entity version.
  • ontology_identifier (IRI) – Term or code used to identify the parcellation entity version registered within a particular ontology.
  • relation_assessments (QualitativeRelationAssessment, QuantitativeRelationAssessment) – no description available
  • version_identifier (str) – Term or code used to identify the version of something.
  • version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.
class fairgraph.openminds.sands.atlas.parcellation_terminology_version.ParcellationTerminologyVersion(id=None, data=None, space=None, **properties)[source]

Bases: fairgraph.base_v3.KGObjectV3

Parameters:
  • defined_ins (File) – Reference to a file instance in which something is stored.
  • name (str) – Whole, non-abbreviated name of the parcellation terminology version.
  • has_entity_versions (ParcellationEntityVersion) – no description available
  • is_alternative_version_of (ParcellationTerminologyVersion) – Reference to an original form where the essence was preserved, but presented in an alternative form.
  • is_new_version_of (ParcellationTerminologyVersion) – Reference to a previous (potentially outdated) particular form of something.
  • ontology_identifier (IRI) – Term or code used to identify the parcellation terminology version registered within a particular ontology.
  • alias (str) – Shortened or fully abbreviated name of the parcellation terminology version.
  • version_identifier (str) – Term or code used to identify the version of something.
  • version_innovation (str) – Documentation on what changed in comparison to a previously published form of something.